SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6598

Length: 1845 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene6598 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	EMB2775 (EMBRYO DEFECTIVE 2775); DNA binding / nucleoside-triphosphatase/ nucleotide binding; K10756 replication factor C subunit 3/5	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	86%

Source	InterPros	Term	Type	Identity
Blast2go	AAA+ ATPase domain	IPR003593	-	86%
Blast2go	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	IPR008921	-	86%
Blast2go	DNA polymerase III, clamp-loader complex, subunit E, C-terminal	IPR019483	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADN5

Fln msg:

Fln protein: MLWVDKYRPRSLDKISVHREIANNLKNLVSEHDCPHLLFYGPSGAGKKTLIMALLKQIFGPGAEKVKVENKPWKIEAGTRNIDVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKEMAKSRPIDVNGTKCFKVLVLNEVDKLSKEAQHSLRRTMELYSGACRIILCCDSVSKVLEAVRSRCLNIRVNSPSKDQIVEVLEYIAKKEGLQLPLGFTGRIAQQSNRNLRRAILCFEACKVQQYPFTNNQPVQTLDWEQYISEIASDIVNEQSPKRLYMVRGKIYELLVNCIPPVVVLKRLLFELMKKLDSELKHEVCHWAAYYEHRMRLGQKAIFHLEAFIAKFMSIYKKFLIATFG*

Protein Length: 356

Fln nts: CGTCGTGACCTTGGCTGTGGGTGAGATTGAAAAGTGGTCCCAGACAGCCATGTAGGTAGGCTATGAGAACATGCAATCGGGATAAGGGTTGCCGTTATTCTAATTCCTCCCGCCAAAACCCAACCCTCGTTACAGAGGTTTCTAACGTTGTTTGCTTGGCTGTCATTGTCATTCGCTGGCCCTGCTCTTGCTTGCCCTCTGTTTTTCGGCGATACTTTGAAATATAGAAAAGTGATTGTCCCGTTCGAATAAGAGCAAA_-_ATGTTGTGGGTGGATAAATACCGTCCCAGGTCCCTGGACAAGATCAGCGTGCACCGGGAAATTGCAAACAACTTGAAAAACTTGGTTTCTGAGCATGACTGCCCTCATCTACTATTCTATGGACCATCTGGTGCCGGAAAGAAAACTTTAATCATGGCTTTGCTTAAGCAGATATTTGGTCCAGGGGCGGAGAAGGTGAAGGTAGAAAATAAGCCATGGAAGATTGAGGCTGGTACAAGGAACATTGATGTGGAGTTGACAACAGTATCAAGTAATCATCACGTGGAATTGAATCCTAGTGATGCAGGTTTTCAAGATAGATATGTTGTTCAAGAGATTATCAAAGAAATGGCCAAGAGTAGGCCTATTGATGTAAATGGGACTAAATGCTTCAAAGTGCTTGTTCTCAATGAAGTTGACAAGCTTTCTAAAGAGGCTCAGCACTCTCTCCGACGAACAATGGAACTCTACAGTGGAGCATGCCGAATAATTTTATGCTGTGATAGTGTGTCAAAAGTACTTGAAGCAGTGAGATCCCGTTGCCTGAATATTCGCGTCAATTCACCTTCAAAGGATCAAATAGTTGAAGTACTTGAATATATTGCTAAGAAAGAAGGACTGCAACTTCCTTTGGGATTCACAGGTCGTATAGCTCAACAATCTAACAGAAACTTAAGGAGAGCAATTCTTTGCTTTGAGGCTTGCAAAGTGCAACAGTATCCTTTCACTAACAATCAGCCTGTACAAACATTAGACTGGGAACAGTACATTTCTGAGATTGCTTCAGATATTGTAAATGAGCAGAGCCCTAAAAGGCTTTATATGGTACGGGGAAAGATTTATGAACTACTTGTGAATTGCATTCCTCCAGTAGTGGTTCTCAAGAGATTGTTGTTTGAATTGATGAAGAAATTGGACTCTGAATTGAAACATGAAGTTTGCCACTGGGCTGCTTATTATGAACATAGGATGCGTCTTGGACAGAAGGCAATATTTCACCTGGAAGCTTTCATTGCGAAATTCATGAGCATATATAAGAAGTTTTTAATTGCAACCTTTGGCTGA___GAACATAGCATGATGTAGAGTTTATGCTGTAAACGTTTCCTTGCATGGACTGAGGGGAAAGCGTTGGGTTTGTTCTTTTTTATTCTAAAATGAATGAAAAAAGAAGAAGTGCCATGTTGGCTCTATCTTTGAAGGTTGCGATTTGGAGTTTGTTCAAAGGTGGTCATGGGTTGATCTTCAGTGGTCATAAGCCTCTGTATATTAAGTGTTGTTGGAGATGATTTTCATGTCTTCACACTGTCTTATTGATGCAATCATTGCCATTGGCAAAATATATGCTTTCTTTTGATACTTCCATATAAAGCTCTCATGTCTATGTGCAACGCCCGTGATGCAGCATAGTTATTAGTGTTGATCTTGTACAGTAAAATTAGAATATTTTGATTTGACATGCTTTCTAGAGACATTGCTGGCAGTATTTTTGCAATTCAGGTGTGTTGAGAATTTTGTTTGATGAGCTTTTGATACTTCAGAAATCTGTACAGTTATGGAAAATTGAATATTATCCATGTATTATATTT

Fln Alignment:

sp_v1.1_unigene6598___MLWVDKYRPRSLDKISVHREIANNLKNLVSEHDCPHLLFYGPSGAGKKTLIMALLKQIFGPGAEKVKVENKPWKIEAGTRNIDVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKEMAKSRPIDVNGTKCFKVLVLNEVDKLSKEAQHSLRRTMELYSGACRIILCCDSVSKVLEAVRSRCLNIRVNSPSKDQIVEVLEYIAKKEGLQLPLGFTGRIAQQSNRNLRRAILCFEACKVQQYPFTNNQPVQTLDWEQYISEIASDIVNEQSPKRLYMVRGKIYELLVNCIPPVVVLKRLLFELMKKLDSELKHEVCHWAAYYEHRMRLGQKAIFHLEAFIAKFMSIYKKFLIATFG
D5ADN5______________MLWVDKYRPRSLDKISVHREIANNLKNLVSEHDCPHLLFYGPSGAGKKTLIMALLKQIFGPGAEKVKVENKPWKIEAGTRTIDVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKEMAKSRPIDVNGTKGFKVLVLNEVDKLSKEAQHSLRRTMEIYSGACRIILCCDSVSKVLEAVRSRCLNIRINSPSKEQIVDVLEYIAKKEGLQLPMGFTGRIAQQSNRNLRRAILCFEACKVQQYPFTDNQPAQTLDWEQYISEIASDIVNEQSPKRLYMVRGKIYELLVNCIPPEVVLKRLLFELMKKLDSELKHEVCHWAAYYEHRMRLGQKAIFHLEAFIAKFMSIYKKFLIATFG

SNPs (tot: 104)

Position	A %	C %	G %	T %	Probability
201		16	83		0.994512
202		83		16	0.994512
254			12	87	0.992554
255			87	12	0.992554
334		15		84	0.999986
336		15		84	0.999986
340		84	15		0.999986
411		11	77	11	0.968132
412		88	11		0.923564
414	11	77	11		0.968132
415			11	88	0.923564
417	11			88	0.923564
419	12			62	1.0
420	12		12	75	0.975346
422		14	14	57	0.979185
423	28			71	1.0
424	14	14		71	0.984337
425			28	71	1.0
426			16	83	0.994512
430			16	83	0.994512
431	16			83	0.994512
433	83		16		0.994512
500		10		90	0.90298
501	90	10			0.90298
502	90	10			0.90298
583		88	11		0.923564
585			11	88	0.923564
586	12	87			0.992554
590		12	87		0.992554
591		12		87	0.992554
592	12		87		0.992554
594	87		12		0.992554
595	87		12		0.992554
597	87	12			0.992554
598	12			87	0.992554
599		12		87	0.992554
602		75	25		1.0
604			14	85	0.993533
606	14			85	0.993533
618	85		14		0.993533
1223	33		66		0.997452
1436	12		87		0.999964
1504		88		11	0.999952
1505		88	11		0.999952
1507	80		13	6	0.999961
1509	20			80	1.0
1510		13	6	80	0.999961
1511	13			86	0.999973
1512			20	80	1.0
1513	6	13		73	0.999956
1518		6	13	80	0.999961
1520	6	13	80		0.999961
1521	13		6	80	0.999961
1522		13	6	80	0.999961
1523		4	27	68	1.0
1524	18		81		1.0
1526	82		17		1.0
1528		9		90	0.999872
1529			9	90	0.999872
1671	83	16			0.999991
1672		16	75		0.99999
1677			10	90	0.90298
1678			88	11	0.923564
1679	88		11		0.923564
1682	88		11		0.923564
1685	11		88		0.923564
1687	11		88		0.923564
1689		11		88	0.923564
1690		11	88		0.923564
1691	11	88			0.923564
1694		88	11		0.923564
1695	88			11	0.923564
1696	88	11			0.923564
1699	87		12		0.992554
1701		12		87	0.992554
1703	14			85	0.993533
1704			14	85	0.993533
1705	85			14	0.993533
1708	85	14			0.993533
1712	14			85	0.993533
1713	14	85			0.993533
1714			14	85	0.993533
1717	85	14			0.993533
1722		16	66	16	0.988813
1724	20		80		0.995493
1725			20	80	0.995493
1728	20		80		0.995493
1732		20		80	0.995493
1733		20		80	0.995493
1734	20			80	0.995493
1735	20			80	0.995493
1740	20		80		0.995493
1741		20	80		0.995493
1744		20	80		0.995493
1755	75	25			0.996473
1756	75	25			0.996473
1758	25		75		0.996473
1759			75	25	0.996473
1828		33	66		0.997452
1829	66	33			0.997452
1830		33	66		0.997452
1831		33		66	0.997452
1832		33	66		0.997452
1834		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain