SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6574

Length: 2251 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6574
CGGTGGCGGTGGTGGTGTTGGCGTCGGTGGAGCTCCTAAGGTTGATGAATTGCAGCCCCATCCGGCCAAGGATCAGCTTGCAGGAATAGATTTCTGCATAACCAGTCCTCCTCCATGGCCGGAAGCCATTTTATTAGGTTTCCAGCACTATTTGGTGATGTTGGGCACCACTGTTATCATCCCTTCGATGCTTGTTCCTATGATGGGTGGCTCCAACGAGGATAAGGCCAAAGTTATCCAGACATTACTGTTTGTAGCAGGTCTTAATACACTATTTCAAACCACATTTGGTAGTAGGCTGCCCGCTGTTATAGGAGGCTCATATGCCTTTATCCTTCCTACAGTTTCCATCATTGGTTCCCACAGAAACCAAGGCATTCTCGATAATGGTGACAGATTTAAGCATACCATGCGAGGAATACAGGGTGCTCTGATTGTTGCTTCTGCTCTGCAAATCATCCTGGGATTCAGTGGTCTGTGGGCTGTTGTTGTAAGGTATCTGAGTCCTCTTTCAGCAGTTCCGCTAATAACTCTTGTTGCTCTTGGGCTCTATGAACTTGGGTTCCCGGGGGTGGGGAAATGCATAGAAATAGGGCTTCCACAGCTTATTGCACTTGTCTTCTTTTCACAGTATGGTCGACATATCAAGACTCGTAAGAAGCCTTTATTTGAGCGTTTTGCCATCATAATTGCAGTTGCTATTGTGTGGGCATATGCCCATATTCTCACTGTAGGTGGAGCATACAAGCATACCCCTCAAAGGACCCAAGCCCATTGCCGAACAGACCGTTCTAGACTAGTTGGTGGTGCCAAATGGATAAGTGTTCCATATCCATTTCAATGGGGAGGACCTGTTTTTGATGGAGGACAGTCTTTTGCAATGATGGCTGCAGCATTTGTGTCTCTTGTTGAGTCTACTGGTACATTCTATGCTGTTTCAAGGTTTGCAAGTGCCACACCTCCCCCTCCATCTATCATCAGCCGTGGTATAGGCTGGCAGGGAATTGGAATTTTATTGGATGGGATGTTTGGAACTGGAAATGGGTCCACATTATCAGTTGAGAATGCTGGTCTTTTGGGGTTGACACGAGTTGGGAGTCGCAGGGTGGTCCAGATATCAGCAGGATTTATGATATTCTTCTCTGTTCTTGGCAAATTTGGAGCAATCTTTGCTTCTATTCCAGCACCTATTGTCGCTGCCGTGTACTGTCTTCTCTTTGGTTATGTTGCTGGTGGGGGTCTCAGTTTCCTTCAATTTTGCAATCTAAATAGTTTCAGGACGATGTTCATCTTGGGCTTCTCTCTGTTTTTGGGATTATCGGTACCACAGTACTTCAATGAATTTACAGTTTCTTCTGGTCATGGTCCAGTCCACACTCATGGACGATGGTTCAATGACATTATCAATGTGATTTTCTCGTCACCACCTTTAGTAGCTGGCAGCGTAGCATTGTTTTTGGATAACACTCTACATATGGGGGAGAGTTCAACAAGGAAAGACAGAGGCCATCATTGGTGGGATAAGTTCCGTTCATTCAAAACCGATCCTAGAAGTGAAGAGTTTTATGCTCTCCCTTTCAACCTGACCAAGTTTTTCCCATCTGTCTGAGGATGAAACTCTATTTTAGAGGTGGGGTCTCTGTTTTATCAATAGCCGTGGTGCATTTGGAGAATAATTAGAGTGTCTTCAATTCAGAAAGAGACAACTTCAGTGTGAAATCTAAGATGTCTATATTTTATATCTATCACTTTGATAGGGAACTGCTTTCACGAATTATCTCAAATGGATATCTCTGTGCCCTGGTCAATCATTTTCAGAGCACTTCAGGATCACTGCTCTTGGCAAGCAGCAAAAGGAGAATAATGAAAAGGAAAAGTACATTTCAGACTCTCAGAGTGGTCAATATGCTATCTTGACTCCAATTCAAAAGAGGCATGTTGTGCATAGAGTAGTTTATTTTTGTAAGTACTTTTGAAGATGCAACAGATGTTTTTGTTGTTGGTGCTTCAAATTGAGCCAATGAGCATTTATCTGGAACTCGAGTCATATAGAGTCATTTTATAGTAATGATATCTTAAGCCCCCTTGCAAAGGCATTAGTAGGAACTAGCAGTACAATTGCTTTCTGATATTCTCCACGCATAATGCGAGAATTATTAGTTATTCATAGCACATGTTTAAAATATAATTTTTTTGGTAAACGTTGTTTGCCTTTGAAATAAAGACTTCAGCTCCTGTTGACAGCCCAAAA

Ace file of the UniGene sp_v1.1_unigene6574

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	permease I	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	permease i	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	82%
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Xanthine/uracil/vitamin C permease	IPR006043	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ21

Fln msg: W2: There is no M at the beginning,

Fln protein: GGGGGVGVGGAPKVDELQPHPAKDQLAGIDFCITSPPPWPEAILLGFQHYLVMLGTTVIIPSMLVPMMGGSNEDKAKVIQTLLFVAGLNTLFQTTFGSRLPAVIGGSYAFILPTVSIIGSHRNQGILDNGDRFKHTMRGIQGALIVASALQIILGFSGLWAVVVRYLSPLSAVPLITLVALGLYELGFPGVGKCIEIGLPQLIALVFFSQYGRHIKTRKKPLFERFAIIIAVAIVWAYAHILTVGGAYKHTPQRTQAHCRTDRSRLVGGAKWISVPYPFQWGGPVFDGGQSFAMMAAAFVSLVESTGTFYAVSRFASATPPPPSIISRGIGWQGIGILLDGMFGTGNGSTLSVENAGLLGLTRVGSRRVVQISAGFMIFFSVLGKFGAIFASIPAPIVAAVYCLLFGYVAGGGLSFLQFCNLNSFRTMFILGFSLFLGLSVPQYFNEFTVSSGHGPVHTHGRWFNDIINVIFSSPPLVAGSVALFLDNTLHMGESSTRKDRGHHWWDKFRSFKTDPRSEEFYALPFNLTKFFPSV*

Protein Length: 537

Fln nts: CGGTGGCGGTGGTGGTGTTGGCGTCGGTGGAGCTCCTAAGGTTGATGAATTGCAGCCCCATCCGGCCAAGGATCAGCTTGCAGGAATAGATTTCTGCATAACCAGTCCTCCTCCATGGCCGGAAGCCATTTTATTAGGTTTCCAGCACTATTTGGTGATGTTGGGCACCACTGTTATCATCCCTTCGATGCTTGTTCCTATGATGGGTGGCTCCAACGAGGATAAGGCCAAAGTTATCCAGACATTACTGTTTGTAGCAGGTCTTAATACACTATTTCAAACCACATTTGGTAGTAGGCTGCCCGCTGTTATAGGAGGCTCATATGCCTTTATCCTTCCTACAGTTTCCATCATTGGTTCCCACAGAAACCAAGGCATTCTCGATAATGGTGACAGATTTAAGCATACCATGCGAGGAATACAGGGTGCTCTGATTGTTGCTTCTGCTCTGCAAATCATCCTGGGATTCAGTGGTCTGTGGGCTGTTGTTGTAAGGTATCTGAGTCCTCTTTCAGCAGTTCCGCTAATAACTCTTGTTGCTCTTGGGCTCTATGAACTTGGGTTCCCGGGGGTGGGGAAATGCATAGAAATAGGGCTTCCACAGCTTATTGCACTTGTCTTCTTTTCACAGTATGGTCGACATATCAAGACTCGTAAGAAGCCTTTATTTGAGCGTTTTGCCATCATAATTGCAGTTGCTATTGTGTGGGCATATGCCCATATTCTCACTGTAGGTGGAGCATACAAGCATACCCCTCAAAGGACCCAAGCCCATTGCCGAACAGACCGTTCTAGACTAGTTGGTGGTGCCAAATGGATAAGTGTTCCATATCCATTTCAATGGGGAGGACCTGTTTTTGATGGAGGACAGTCTTTTGCAATGATGGCTGCAGCATTTGTGTCTCTTGTTGAGTCTACTGGTACATTCTATGCTGTTTCAAGGTTTGCAAGTGCCACACCTCCCCCTCCATCTATCATCAGCCGTGGTATAGGCTGGCAGGGAATTGGAATTTTATTGGATGGGATGTTTGGAACTGGAAATGGGTCCACATTATCAGTTGAGAATGCTGGTCTTTTGGGGTTGACACGAGTTGGGAGTCGCAGGGTGGTCCAGATATCAGCAGGATTTATGATATTCTTCTCTGTTCTTGGCAAATTTGGAGCAATCTTTGCTTCTATTCCAGCACCTATTGTCGCTGCCGTGTACTGTCTTCTCTTTGGTTATGTTGCTGGTGGGGGTCTCAGTTTCCTTCAATTTTGCAATCTAAATAGTTTCAGGACGATGTTCATCTTGGGCTTCTCTCTGTTTTTGGGATTATCGGTACCACAGTACTTCAATGAATTTACAGTTTCTTCTGGTCATGGTCCAGTCCACACTCATGGACGATGGTTCAATGACATTATCAATGTGATTTTCTCGTCACCACCTTTAGTAGCTGGCAGCGTAGCATTGTTTTTGGATAACACTCTACATATGGGGGAGAGTTCAACAAGGAAAGACAGAGGCCATCATTGGTGGGATAAGTTCCGTTCATTCAAAACCGATCCTAGAAGTGAAGAGTTTTATGCTCTCCCTTTCAACCTGACCAAGTTTTTCCCATCTGTCTGA___GGATGAAACTCTATTTTAGAGGTGGGGTCTCTGTTTTATCAATAGCCGTGGTGCATTTGGAGAATAATTAGAGTGTCTTCAATTCAGAAAGAGACAACTTCAGTGTGAAATCTAAGATGTCTATATTTTATATCTATCACTTTGATAGGGAACTGCTTTCACGAATTATCTCAAATGGATATCTCTGTGCCCTGGTCAATCATTTTCAGAGCACTTCAGGATCACTGCTCTTGGCAAGCAGCAAAAGGAGAATAATGAAAAGGAAAAGTACATTTCAGACTCTCAGAGTGGTCAATATGCTATCTTGACTCCAATTCAAAAGAGGCATGTTGTGCATAGAGTAGTTTATTTTTGTAAGTACTTTTGAAGATGCAACAGATGTTTTTGTTGTTGGTGCTTCAAATTGAGCCAATGAGCATTTATCTGGAACTCGAGTCATATAGAGTCATTTTATAGTAATGATATCTTAAGCCCCCTTGCAAAGGCATTAGTAGGAACTAGCAGTACAATTGCTTTCTGATATTCTCCACGCATAATGCGAGAATTATTAGTTATTCATAGCACATGTTTAAAATATAATTTTTTTGGTAAACGTTGTTTGCCTTTGAAATAAAGACTTCAGCTCCTGTTGACAGCCCAAAA

Fln Alignment:

sp_v1.1_unigene6574___APKVDELQPHPAKDQLAGIDFCITSPPPWPEAILLGFQHYLVMLGTTVIIPSMLVPMMGGSNEDKAKVIQTLLFVAGLNTLFQTTFGSRLPAVIGGSYAFILPTVSIIGSHRNQGILDNGDRFKHTMRGIQGALIVASALQIILGFSGLWAVVVRYLSPLSAVPLITLVALGLYELGFPGVGKCIEIGLPQLIALVFFSQYGRHIKTRKKPLFERFXXXXXXXXXXXXXXXLTVGGAYKHTPQRTQAHCRTDRSRLVGGAKWISVPYPFQWGGPVFDGGQSFAMMAAAFVSLVESTGTFYAVSRFASATXXXXXXXXRGIGWQGIGILLDGMFGTGNGSTLSVENAGLLGLTRVGSRRVVQISAGFMIFFSVLGKFGAIFASIPAPIVAAVYCLLFGYVAGGGLSFLQFCNLNSFRTMFIXXXXXXXXXXVPQYFNEFTVSSGHGPVHTHGRWFNDIINVIFSSPPLVAGSVALFLDNTLHMGESSTRKDRGHHWWDKFRSFKTDPRSEEFYALPFNLTKFFP
B8LQ21______________APKLEDIT-HPPMEQLPGLEYCIDSNPPWPETIILGFQHYILMLGTTVMVPTFLVPAMGGNDHDKVRVIQTLLFVAGINTLLQSLFGTRLPTVVGGSFAFIIPITSIINDSSLRSIPDDHQRFLHTMRAIQGALIASSSLQIILGYSQLWGIFSRFFSPLGMTPVIALVGLGLFERGFPGVGKCVEIGLPMLIIFVGFAQYLKHIQARDLPVFERFPVLICITLVWAYAHLLTASGAYKHVPERTKINCRTDRAHLISSAPWIKLPYPLQWGAPTFDAGHTFGMMSAVLVSLIESTGAYKAASRLASATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGITRVGSRRVVQISACFMIFFSILGKFGALFASIPFPIFAALYCVLFGLVAAVGISFIQFTNMNSMRNLFILGVSLFLGLSIPQYFNEFYATSRVGPVHTNAGWFDDFLNTIFSSPPTVALIIAVFLDNTLEVEHS--KKDRGMPWWVKFRTFRGDSRNEEFYTLPFNLNKFFP

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
91	75			25	0.996473
171	77		22		0.999999
172		77		22	0.999999
173		22		77	0.999999
176			22	77	0.999999
178		22		77	0.999999
180	77			22	0.999999
182		77	22		0.999999
183		77	22		0.999999
188	22		77		0.999999
189	77	22			0.999999
191	11	11	77		0.968132
192	11	88			0.923564
230		14		85	0.993533
272	14		85		0.993533
572	12		87		0.992554
573			87	12	0.992554
576	10		90		0.90298
578			90	10	0.90298
579	90		10		0.90298
581	90		10		0.90298
587	75		8		0.99999
605	10		90		0.90298
1107	16		83		0.994512
1275	11			88	0.923564
1277		88	11		0.923564
1278	88		11		0.923564
1312	11			88	0.923564
1364		10		90	0.90298
1427	88		11		0.923564
2248		33	66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain