SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6566

Length: 1568 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6566

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucosidase, putative (EC:3.2.1.21); K05349 beta-glucosidase [EC:3.2.1.21]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	protein	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	72%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	72%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	72%
Blast2go	Metabolic pathways	01100	72%

Source	ECs	Term	Type	e value	Identity
AutoFact	Beta-glucosidase.	EC:3.2.1.21	-	0.0	56%

Source	KEGGs	Term	Identity
AutoFact	Cyanoamino acid metabolism	00460	56%
AutoFact	Starch and sucrose metabolism	00500	56%
AutoFact	Phenylpropanoid biosynthesis	00940	56%
AutoFact	Biosynthesis of secondary metabolites	01110	56%

Source	GOs	Term	Type	Identity
Blast2go	xylan catabolic process	GO:0045493	Biological Process	72%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	72%
Blast2go	apoplast	GO:0048046	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: your sequence is longer than subject: 342 - 304

Fln protein: MIGNYAGIPCRYTTPLQGLSAYTQTVYAPGCANVACTGNESIPQAVQTASNADATVLIVGGDLSLEAEALDRTSLLLPGLQQQLVDLVTDAAKGPVVLVIMSGGPFDITFAKNVNKISGILWVGYPGQAGGAAIADVIFGKYNPGGRLPVTWYPEEFAAKVPLTDMNMRPDPARGYPGRTYRFYTGKTVYNFGDGLSYTKFEHTLVNAPKVISLPTRGRRTCCRTKSKPCVAVRVTHIKCKHLSLKLAVDVKNAGSRDGSQVLFLFSTPPSSNGLNPPTKQLIGFRKIHVQAGATKRVHFRNNVCKDLSVVDKTGTRKVPLGSHQLHIGDLQQDVSLQITC*

Protein Length: 343

Fln nts: GGCTCAGCAGCCATATGGGAATCTTGGACCTAATGATGTGTGCACTGATGCTAATCAGCAGTTGGCTCTCGAGGCTGCGAGGGAAGGGATAGTGCTGCTAAAGAATGATGGTAAATTGCCATTAGCAACAAACCTCGTCCACACCTTGGCTGTCACTGGCCCCAATGCGAATGTCACTGCAACA_-_ATGATCGGAAACTATGCCGGCATCCCATGTAGGTACACAACGCCCCTTCAAGGCCTTTCAGCTTACACTCAAACTGTCTACGCACCTGGCTGTGCAAACGTTGCATGCACGGGAAACGAGTCAATACCTCAGGCAGTCCAGACAGCCAGCAATGCAGATGCAACAGTGCTAATAGTTGGTGGAGACTTGTCATTGGAAGCAGAGGCTCTAGACAGAACAAGTTTGCTGTTACCAGGACTGCAACAGCAGCTCGTAGACCTAGTTACCGACGCAGCCAAGGGACCTGTAGTTCTTGTGATTATGTCAGGGGGTCCATTTGACATAACATTCGCAAAGAATGTTAACAAGATCTCAGGGATTCTTTGGGTGGGTTATCCGGGACAAGCTGGAGGAGCAGCCATTGCAGATGTAATATTTGGAAAATACAATCCAGGTGGCAGACTGCCTGTGACTTGGTACCCAGAAGAGTTCGCTGCCAAAGTCCCCCTGACTGACATGAACATGAGACCAGATCCTGCCCGAGGTTACCCTGGCCGGACTTACAGATTTTATACAGGAAAAACTGTGTACAATTTCGGTGATGGACTGAGCTATACAAAATTCGAGCACACTCTAGTTAATGCACCCAAGGTCATCTCTCTTCCCACCCGTGGACGCAGAACATGTTGTCGGACAAAATCAAAACCTTGTGTGGCTGTCAGAGTCACCCACATTAAATGTAAGCACTTGTCCCTGAAACTTGCTGTTGATGTAAAGAATGCTGGTTCTCGAGATGGAAGCCAAGTATTGTTTTTATTCTCTACACCACCATCCAGTAATGGACTCAATCCCCCAACGAAGCAACTGATTGGATTCAGAAAGATTCATGTCCAAGCAGGAGCCACAAAAAGAGTCCATTTCAGAAATAATGTTTGCAAGGACCTCAGCGTTGTTGACAAGACTGGAACCAGAAAGGTGCCACTAGGTTCTCATCAACTTCACATTGGTGATCTGCAACAGGATGTTTCTCTTCAGATAACCTGCTGA___TTCACATGAAGGGAGGGGAAATATGGTTCTCATAATGTTTCTCAGCCAAGTGAGGAACATATTATTGATCATTTTTCATGTTTTTTAACAATTAATGGCAGTAGCTATGTTGCTATTCATGATTACTATTTTGTTTCTCCAGCTGAAATTGCCATGGGTCAGATTTATGATAGTTAACATCATTGCCTTCACAGTAAATCTTCACCCAGAGATTCACCAGTCAGATCAGGGGTGTTGATCACTACATTGTTTTAGAATCTTCATCAGTCAGAAGAAGGGTGTTTGATCACTACTTGGAATTGGTTTAGATTCTGTATGATGACTGGTTTTATTAATGAATAAGCTAAACTTTAACTAC

Fln Alignment:

sp_v1.1_unigene6566___QAVQTASNADATVLIVGGDLSLEAEALDRTSLLLPGLQQQLVDLVTDAAKGPVVLVIMSGGPFDITFAKNVNKISGILWVGYPGQAGGAAIADVIFGKYNPGGRLPVTWYPEEFAAKVPLTDMNMRPDPARGYPGRTYRFYTGKTVYNFGDGLSYTKFEHTL--VNAPKVISLPTRGRRTCCRTKSKPCVAVRVTHIKCKHLSLKLAVDVKNAGSRDGSQVLFLFSTPPSSNGLNPPTKQLIGFRKIHVQAGATKRVHFRNNVCKDLSVVDKTGTRKVPLGSHQLHIGDLQQDVSL
D5ABI5______________EAVETAKKVDEVIVVVGLDQTQEKEERDRIKLTLPGQQENLVYQVSRAAKRPVVFVILSGGPVDVSFAVNDPQISSIIWAGYPGQAGGQALAEIIFGDYNPGGRLPMTWYPQDF-VKIPMTDMNMRPNHDTGYPGRTYRFYTGKKVFEFGQGLSYSAYSYNFSSTTIQKIDLNVTMEHFEALGNRGKG--HVRVENTPCRKLKFRSSIFVRNHDKMDGRHAVLLYSKSPATH-KGAPQKQLIGFRSVHVQGKHTAKVTFVVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQYPVSL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1074	12		87		0.992554
1114		10		90	0.90298
1121	88			11	0.923564
1122	88			11	0.923564
1124	88		11		0.923564
1128			88	11	0.923564
1129	88	11			0.923564
1135	90	10			0.90298
1136	90		10		0.90298
1137	90			10	0.90298
1138		10	90		0.90298
1142	10	90			0.90298
1147	90			10	0.90298
1438	85		14		0.993533
1439	14		85		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain