SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6564

Length: 1454 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6564

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR) [Arabidopsis thaliana] sp\|Q8GWJ6.1\|MUB6_ARATH RecName: Full=Membrane-anchored ubiquitin-fold protein 6; Short=AtMUB6; Short=Membrane-anchored ub-fold protein 6; Flags: Precursor dbj\|BAC43392.1\| u	-	-	2.0e-35	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	protein	-	-	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Membrane-anchored ubiquitin-fold protein, HCG-1	IPR017000	-	0.0	82%
Blast2go	Ubiquitin supergroup	IPR019955	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPM2

Fln msg:

Fln protein: MSGEEYLEVKFRLHDGTDIGPKRYLSATTVATLKESVLAQWPKEKENGPRTINDVKLINAGKILENNKTLGECRGPICDLPGGVITMHVVLRPLSAEKGSEKQPSDSPKDSKCMCIIL*

Protein Length: 120

Fln nts: CGTCGTGACCTTGGCTGTGACGCTATTCCTACCTTTGCTTGAAGTTGTAAAGAAGAAATGGGATTGGAAAAAACCAAGAGGCGCATATACACATATTGGGTTGAATAATTTAGTGCACATTGTGGCAATGACACGGCTTAGAGCCGCAGTAATGATCAATAAATAGTCAGGCAAGATGCATCATTGCCTCAATTATTTGTAGGATCAGGCTGTATTTAGTGTTTGACAGGTCTTTCCATTTTTTGTAGTTCTGGGTTAGAATTGTTTTGCTTCGAGGAAGGTCAAATATTGCCAAGACCTTGATTTCAAGTTTTTTCAAACAGAAGAGTCTTTGGGTGTTACAAATGGTGGAGTTTGCAGATTGAAGCTGTGTTTTATGAAGGGTATCTGCAAGAGATGTTATCATAGTTTTTTTTCGAGGAAACCCAAGCCTGTAATAGCGTTTTTCTGGGTTACCCTTTAAGGTGTGACAAGGGTTCCCAAACTGAGGGTTTTAAGCTGCTTTTAGAGGGTTTTCTGAACCAGGATCTGGGTATTTTGAGAA_-_ATGTCAGGGGAAGAGTATTTGGAGGTCAAGTTCAGGCTCCATGATGGTACAGACATTGGTCCCAAAAGATATTTATCTGCCACCACTGTTGCCACCTTGAAGGAAAGCGTCCTTGCACAATGGCCCAAAGAAAAAGAGAACGGGCCAAGAACCATAAATGATGTTAAGTTGATCAATGCTGGAAAGATATTGGAGAACAATAAAACTCTTGGGGAGTGCAGGGGTCCAATATGTGATCTTCCTGGTGGAGTCATAACTATGCATGTTGTTTTGCGCCCTCTGTCAGCTGAAAAAGGAAGCGAAAAGCAGCCTTCAGACTCGCCAAAGGACAGCAAATGCATGTGCATAATTCTATAG___CCTGATGGCATTCAAAAGGAAAACAATAACCTTTTATGTCGCGATTCTCCATATTTGATTTCGTTCACTGTGACCAGAGGTGACGTGTCATATCTAATTTATATGTCGAATGTCGGCTCCAGCAAGTGATTTTTTCCGGCGACAAAAGGTGACTCATTTACAGTGGAAGATGGCATTTACAGAAGCTAGTGTTCATAACTTCATTGGTAACATATGTTGGTGGTGGTCACTGTTAATCAAAAATTCCTTCACTAAAGCTCTTATTTTTGTAATTGGAGGAACCCAAATTTGAAGAAATGCATTTTACAAATATGATTTTATAACATTCGCTTCCCTGAGATGTCTGCGTGAGGGTGTTGTGCAGGCAATGTTTCTTTAGTTGTGATTGTTTTTATTATCTTTGTGTTAGTCCTATGTCCATGCAAATGTGGACAGTTGGCACATAAATAAGATTATTGAAAGAGTTTGAGATTGATTCCAATGATAATAGAAAGTAATATGATGAGTGTTTTCAGTCGTCAAATGAAAAATATTTCAGCAACCTAGAAAAAAA

Fln Alignment:

sp_v1.1_unigene6564___MSGEEYLEVKFRLHDGTDIGPKRYLSATTVATLKESVLAQWPKEKENGPRTINDVKLINAGKILENNKTLGECRGPICDLPGGVITMHVVLRPLSAEKGSEKQPSDSPKDSKCMCIIL
A9NPM2______________MSGEEYLEVKFRLHDGTDIGPRRYLSATTVATLKESVLAQWPKEKENGPRTINDVKLINAGKILENNKTLGECRGPICDLPGGVITMHVVLRPPSAEKGNEKQPSDSPKDSKCMCVIL

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
192	11	22		66	0.999999
195		88	11		0.923564
196		88	11		0.923564
197			11	88	0.923564
393		11		88	0.923564
394	88		11		0.923564
400	88	11			0.923564
401	88			11	0.923564
402			88	11	0.923564
403	88		11		0.923564
405	88	11			0.923564
409		11		88	0.923564
511	33		66		1.0
881		8	91		0.999807
883	86			8	0.999539
885	91			8	0.999807
887	8	91			0.999807
888	91	8			0.999807
889	91	8			0.999807
890	91			8	0.999807
893		91	8		0.999807
894	91	8			0.999807
902	91	8			0.999807
1123	85		3	10	1.0
1125	85	10	3		1.0
1129		14		85	1.0
1130	10	3	85		1.0
1131		10	85	3	1.0
1347	38			61	1.0
1433	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain