SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6559

Length: 1181 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6559

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Origin recognition complex subunit, putative n=1 Tax=Ricinus communis RepID=B9RIC0_RICCO	-	-	75%
FL-Next	tr=Origin recognition complex subunit, putative; Ricinus communis (Castor bean).	-	-	81%
Blast2go	origin recognition complex	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	87%
Blast2go	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	87%
Blast2go	double-stranded methylated DNA binding	GO:0010385	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	intracellular organelle	GO:0043229	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, AAA-type, core	IPR003959	-	0.0	87%
Blast2go	Origin recognition complex, subunit 1	IPR020793	-	0.0	87%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RIC0

Fln msg: Separated hits, possible frame ERROR between 439 and 558, your sequence is shorter than subject: 316 - 844

Fln protein: VVTLAVTHYEALTGHRVGWKKALHLLNQRFSESKHTSKDNNQPCVLLVDELDLLVTRNQSVLYNIFDWPTRAWSRLVVIGIANTMDLPEKLLPRIASRMGMQRLCFGPYSHQQLQEIISSRLNGIDAFEKQAIEFASRKVAAVSGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKSLVGMADVEAAIHEMFQAPHIQMMRRCSRLAKIFLVAMVYEQHKTGMSETTFEKLAISISFLCRNNGEQCHDWDTIFSVGCRLGACRILLCEPGFRHRLQKLQLNFPSDDVSFALKEDKDLPWVSKYL*

Protein Length: 317

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTATGAGGCATTGACTGGACATCGGGTAGGCTGGAAAAAAGCTCTTCATTTGTTAAATCAACGATTTTCAGAATCAAAACACACGAGCAAAGACAATAATCAACCGTGTGTTCTTCTTGTAGATGAACTTGACCTCCTTGTCACTCGGAATCAATCGGTTCTATACAACATATTTGATTGGCCCACCAGAGCTTGGTCACGGTTGGTAGTTATAGGTATAGCAAATACAATGGATCTACCAGAGAAGTTGCTTCCACGTATAGCAAGTCGCATGGGAATGCAAAGGTTGTGCTTTGGCCCCTATTCTCATCAGCAGCTGCAAGAAATCATTTCTAGTCGTCTTAATGGAATTGATGCATTTGAAAAACAGGCTATTGAATTTGCATCACGGAAGGTTGCAGCAGTGTCTGGGGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAAAAGTTTAGTAGGCATGGCAGATGTTGAAGCTGCAATACATGAAATGTTCCAAGCTCCTCATATTCAGATGATGAGGAGATGCTCAAGACTGGCCAAAATTTTTCTGGTAGCAATGGTGTATGAACAACACAAAACAGGAATGTCAGAAACAACTTTTGAAAAGCTTGCAATATCCATTTCCTTCCTTTGCAGAAACAATGGAGAGCAGTGCCATGATTGGGACACGATTTTTTCTGTTGGTTGTAGGCTTGGTGCATGTCGGATACTTCTTTGTGAACCAGGCTTTCGGCATCGTTTGCAAAAATTACAACTCAACTTTCCAAGTGACGATGTATCTTTTGCCTTGAAGGAGGACAAGGACCTTCCATGGGTGTCAAAGTATTTGTGAAAAAATTCAGTTTCATATTCCGGACTTTACTAGTTTAATTTTGATGCTTGTCCTATTGTGCGAGGGCATTCAAAGGTTGTACTTTTTTTATTATCATTTTTTACAAAATTTCGACTCATTATTTAATTTTTATTTTGTTTCAAATAATAACATAAATGGTTTGAGATCGGTTTTAATAAACATGAAGAAAATATGCATTTTTTAGACCATAAAAAAAAAAAAAAAAAAAAAAAA

Fln Alignment:

sp_v1.1_unigene6559___YEALTGHRVGWKKALHLLNQRFSESKHTSKDNNQPCXXXXXXXXXXXTRNQSVLYNIFDWPTRAWSRLVVIGIANTMDLPEKLLPRIASRMGMQRLCFGPYSHQQLQEIISSRLNGIDAFEKQAIEFASRKVAAVSGDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKSLVGMADVEAAIHEMFQAPHIQMMRRCSRLAKIFLVAMVYEQHKTGMSETTFEKLAISISFLCRNNGEQCHDWDTIFSVGCRLGACRILLCEPGFRHRLQKLQLNFPSDDVSFALKEDKDLPWVSKYL
B9RIC0______________YEALTGHRVGWKKALNLLNERFSDGKKVRKGDDRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDAFEKQAIEFASRKVAAISGDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDLVGMSDVEAAIQEMFQAPHIQVMKNCSKLSKIFLTAMVYELYKTGMGETNFEKLAMTVSCLCTSNGEAFAGWDTLLKVGCMLGESRIIQCEPGARHRLQKLQLNFPSDDVAFALKGSKELPWLAKYL

SNPs (tot: 62)

Position	A %	C %	G %	T %	Probability
45	66		33		0.997452
49			66	33	0.997452
53		33	66		0.997452
54		33	66		0.997452
55		66		33	0.997452
59	66	33			0.997452
60	66			33	0.997452
61	66		33		0.997452
62	66			33	0.997452
63	66	33			0.997452
70	33			66	0.997452
151		40	60		1.0
152	60		40		1.0
153	60			40	1.0
155			40	60	1.0
163		60	40		1.0
164		60	40		1.0
165		40		60	1.0
541		18		81	1.0
543	7	69		23	1.0
545	66		33		1.0
546	66			33	1.0
547	66		33		1.0
549	62	37			1.0
550	62	37			1.0
551			62	37	1.0
552			62	37	1.0
553			37	62	1.0
554	62		37		1.0
556	62			37	1.0
561	62	37			1.0
562	62			37	1.0
563	62	37			1.0
572	85			14	0.993533
739		25		75	1.0
740			25	75	1.0
743		75	25		1.0
746	25			62	1.0
751			25	75	1.0
754	75			25	1.0
756	75			25	1.0
757	71	28			1.0
760	57			28	1.0
761	71	28			1.0
762	28			71	1.0
772		12		87	0.992554
774		87		12	0.992554
776	87		12		0.992554
785	85			14	0.993533
789			85	14	0.993533
790		14		14	0.984337
813			11	88	0.923564
815		11	88		0.923564
820	88			11	0.923564
823			11	88	0.923564
825			88	11	0.923564
827	88			11	0.923564
828		11		88	0.923564
834	14			85	0.993533
835		14		85	0.993533
993		66		33	1.0
1052		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain