SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6548

Length: 2799 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6548
CGTCGTGACCTTGGCTGTCACTCATTTCTACGTCTTCACGTCTTCGAAGATATATAAATATAACTACTTGGCAGAAGAGCCATGCAGGTGTCAGGCTGAGGCAATCTGCCTTTCACCTCTGTCTTTGTCATCCAGACCCCAGCCGCAATCACCTGGCCCCTTACTCTGTTTCTGCATTTTAATCCATTTCCCTGGTACTACTCCATTAATAGATCTTGACAGGGTGCCCTTCATAAAATCCAACCAGCAGGCATTTATATACCTTTATTTTCTCAGCCATGGAAGCTCTCATGGCAATCGTGGCCTGCAATCCCGGGTGCTTCTGTGTTTCTTCTCAGGTACCTAAAAACTCGAAGGCAGGATATATGTCACTTTCTTCTTCGGTATCCCACTTAGGAAGTGTGGGCAAGAGGTTAAGCAGAGGCCAGCATGTAGATTCCTCGTATATTTGGCATCAGCAAAGGATACGAGGACAGTATTCTCCAGGAAGCAGACTGCAGGATTCGAACACAGTCACTGGAGGAACGGGCTTCAGGAAGGAGGATCTTCTGATAGAAAAAGCCGAGGGTGTGCTGACAGATGAAGTTGCGGCACCTGCTAAAGAGGGAATGGCTAAAGAAGCTATTCCCACTTTAGTCTATGGCCACCAAGGTATTCATGAAACACATGAAAAGGAGGAGCATATTTTACCCAATCGTGAAATAGTTACTGGGGATGATGTGGCAGAAGGAAGCCGACGCACCAAAATTTCACACAATATTATTTTTGTAGCAGCTGAAGTTGCTCCATACTCAAAAACAGGAGGTCTTGGAGATGTCTGTGGTTCTCTACCTATTGCCCTTGCTGCTCGAGGCCATCGTGTGATGGTAATATCTCCAAGATATTTGAATGGTGTGACAGATAAGAAGTACAGTGGGGCTTTTGATGTTCAGTGTCGCATTAAAATCATGTGCTTTGGTGGGGAACATCAAGTCGCATTTTTTCATGAGTACAGGGCAGGCGTTGATTGGGTATTTGTTGATCATCCTTCTTTTCACCGGCCTGGTAATCCATATGGTGATAATTTTGGTGCTTTTGGCGATAATCAGTTCCGCTTCACTCTTCTGTGCCATGCTGCTTGTGAGGCTCCTTTAGTACTCCCCTTGGGAGGATTTACATATGGAGAAAAGTGTATATTTATAGCAAATGACTGGCATGCAAGTCTCGTCCCAGTTCTAATAGCAGCTCGGTATCGTCCATATGGAGTTTATCGTGATGCTCGTTCTATTCTTTCTATACATAACCTTGCACATCAGGGGGTTGAACCTGGAACAACCTATGGGAATCTGGGATTACCTCCTGATTGGTATGGATCACTGGAATGGGTCTTTCCTACATGGGCAAGAAAGCATGCTCTTGATAGAGGTGAAGCTGTTAATCATTTGAAAGGTGCAATTGTTACAGCAGATCGAATTCTGACTGTTAGTAAGGGATATGCTTGGGAAATAACAACCACTGAGGGTGGATGGGGTCTTGATGAGCTTCTACAAAGCAGAAAAGCTGTGATTAATGGCATCACGAATGGAATTGATGTTGATGAGTGGAATCCAGCTTCAGACAAACATGTCCCATTCCAGTATTCTGTAGAGGACCTTTCTGGAAAGGCAAAATGCAAGGCAGCTCTACAATTGGAGCTTGGACTTTCTGTTCGACCAGATGTGCCGCTGATTGGTTTCATTGGAAGATTGGACTACCAAAAAGGACTTGATCTTATTCAGTCAGCGCTTCCAGAACTGATGCAAGATGACGTCCAATTTGTTATGCTTGGCTCTGGAGATCCACTCATAGAGTCCTGGATGAAAATGTCAGAATCTACTTATAAAGACAGGTTCAGAGGCTGGGTTGGATTCAGTGTACCTTTTTCACACAAAATAACTGCAGGATGTGACATATTATTGATGCCATCGAGATTTGAACCCTGTGGCCTCAACCAGCTCTACGCAATGAGATATGGGACAGCTCCAGTTGTTCATTGCACTGGAGGTCTCCGGGATACTGTTGTGGACTTTGACCCTTTTGCTAATGAAGGTGAAGGTGTTGGCACGGGATGGAGATTTTCTCCGTTAACTAAGGAAGCTATGCTGGGGACATTGAGGATAGCTATCGAAACGTATCGGCGATACAAATCTTCATGGGAAGGGATCATGAAACGAGGAATGATACAAAACTACACATGGGATAATGCGGCTTCGCAATATGAACAAGTATTCGAGTGGGCTATGATAGATTCACCGTATGTCCCATAAGGAATTTCAAAATTAAGGAATCAGAATTCCATTTTTTGTTTTCATCGTGATTCTGAGTCATACCAGTTATTCTAGTGCAGTCAGTGTTCTCATTCGAAGCATGATCGCATTGCAAGCTTTTTGTTTGAGCATTGAGAGGAAATAAACTGAACAGACAAGAAAACCTGTTAACATGTCTTGAACTTGAGATAAACTTTTTGTGACAAGCCCTGTGACAAATCACTCGTGTATAATTTAGGGTAAATTTTTTAAAATTCAAATGTTTAATTTTTGAAGTATGTGGTTTGTCTCCTTAAACCAGAGATGCTCCCTTTTGTAACGTTATATTCTCACAGAAAAGCCTCAATAGGCTTTCATGACTAGTTTCTAATGGAAATAAAGCTCATGTAGTCTGTTGTTTCAAAACTGTCTTCTTTTGTAATGGTTCATTCTTGGACCTTGAAGTCATTTATTCAATTTAAGCAAAGACATTGATATTACTGGATGGATTTATGAAAATGAAGATGTGCTTTTG

Ace file of the UniGene sp_v1.1_unigene6548

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ss1; starch synthase I; K00703 starch synthase [EC:2.4.1.21]	-	-	73%
FL-Next	sp=Soluble starch synthase 1, chloroplastic/amyloplastic; Oryza sativa subsp. japonica (Rice).	-	-	68%
Blast2go	soluble starch synthase i	-	-	83%

Source	ECs	Term	Type	e value	Identity
AutoFact	Starch synthase.	EC:2.4.1.21	-	0.0	73%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Starch and sucrose metabolism	00500		0.0	73%
AutoFact	Metabolic pathways	01100		0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	amylopectin biosynthetic process	GO:0010021	Biological Process	83%
Blast2go	defense response, incompatible interaction	GO:0009814	Biological Process	83%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Blast2go	Glycosyl transferase, family 1	IPR001296	-	83%
Blast2go	Glycogen/starch synthases, ADP-glucose type	IPR011835	-	83%
Blast2go	Starch synthase, catalytic domain	IPR013534	-	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q0DEC8

Fln msg:

Fln protein: MEALMAIVACNPGCFCVSSQVPKNSKAGYMSLSSSVSHLGSVGKRLSRGQHVDSSYIWHQQRIRGQYSPGSRLQDSNTVTGGTGFRKEDLLIEKAEGVLTDEVAAPAKEGMAKEAIPTLVYGHQGIHETHEKEEHILPNREIVTGDDVAEGSRRTKISHNIIFVAAEVAPYSKTGGLGDVCGSLPIALAARGHRVMVISPRYLNGVTDKKYSGAFDVQCRIKIMCFGGEHQVAFFHEYRAGVDWVFVDHPSFHRPGNPYGDNFGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKCIFIANDWHASLVPVLIAARYRPYGVYRDARSILSIHNLAHQGVEPGTTYGNLGLPPDWYGSLEWVFPTWARKHALDRGEAVNHLKGAIVTADRILTVSKGYAWEITTTEGGWGLDELLQSRKAVINGITNGIDVDEWNPASDKHVPFQYSVEDLSGKAKCKAALQLELGLSVRPDVPLIGFIGRLDYQKGLDLIQSALPELMQDDVQFVMLGSGDPLIESWMKMSESTYKDRFRGWVGFSVPFSHKITAGCDILLMPSRFEPCGLNQLYAMRYGTAPVVHCTGGLRDTVVDFDPFANEGEGVGTGWRFSPLTKEAMLGTLRIAIETYRRYKSSWEGIMKRGMIQNYTWDNAASQYEQVFEWAMIDSPYVP*

Protein Length: 670

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTACGTCTTCACGTCTTCGAAGATATATAAATATAACTACTTGGCAGAAGAGCCATGCAGGTGTCAGGCTGAGGCAATCTGCCTTTCACCTCTGTCTTTGTCATCCAGACCCCAGCCGCAATCACCTGGCCCCTTACTCTGTTTCTGCATTTTAATCCATTTCCCTGGTACTACTCCATTAATAGATCTTGACAGGGTGCCCTTCATAAAATCCAACCAGCAGGCATTTATATACCTTTATTTTCTCAGCC_-_ATGGAAGCTCTCATGGCAATCGTGGCCTGCAATCCCGGGTGCTTCTGTGTTTCTTCTCAGGTACCTAAAAACTCGAAGGCAGGATATATGTCACTTTCTTCTTCGGTATCCCACTTAGGAAGTGTGGGCAAGAGGTTAAGCAGAGGCCAGCATGTAGATTCCTCGTATATTTGGCATCAGCAAAGGATACGAGGACAGTATTCTCCAGGAAGCAGACTGCAGGATTCGAACACAGTCACTGGAGGAACGGGCTTCAGGAAGGAGGATCTTCTGATAGAAAAAGCCGAGGGTGTGCTGACAGATGAAGTTGCGGCACCTGCTAAAGAGGGAATGGCTAAAGAAGCTATTCCCACTTTAGTCTATGGCCACCAAGGTATTCATGAAACACATGAAAAGGAGGAGCATATTTTACCCAATCGTGAAATAGTTACTGGGGATGATGTGGCAGAAGGAAGCCGACGCACCAAAATTTCACACAATATTATTTTTGTAGCAGCTGAAGTTGCTCCATACTCAAAAACAGGAGGTCTTGGAGATGTCTGTGGTTCTCTACCTATTGCCCTTGCTGCTCGAGGCCATCGTGTGATGGTAATATCTCCAAGATATTTGAATGGTGTGACAGATAAGAAGTACAGTGGGGCTTTTGATGTTCAGTGTCGCATTAAAATCATGTGCTTTGGTGGGGAACATCAAGTCGCATTTTTTCATGAGTACAGGGCAGGCGTTGATTGGGTATTTGTTGATCATCCTTCTTTTCACCGGCCTGGTAATCCATATGGTGATAATTTTGGTGCTTTTGGCGATAATCAGTTCCGCTTCACTCTTCTGTGCCATGCTGCTTGTGAGGCTCCTTTAGTACTCCCCTTGGGAGGATTTACATATGGAGAAAAGTGTATATTTATAGCAAATGACTGGCATGCAAGTCTCGTCCCAGTTCTAATAGCAGCTCGGTATCGTCCATATGGAGTTTATCGTGATGCTCGTTCTATTCTTTCTATACATAACCTTGCACATCAGGGGGTTGAACCTGGAACAACCTATGGGAATCTGGGATTACCTCCTGATTGGTATGGATCACTGGAATGGGTCTTTCCTACATGGGCAAGAAAGCATGCTCTTGATAGAGGTGAAGCTGTTAATCATTTGAAAGGTGCAATTGTTACAGCAGATCGAATTCTGACTGTTAGTAAGGGATATGCTTGGGAAATAACAACCACTGAGGGTGGATGGGGTCTTGATGAGCTTCTACAAAGCAGAAAAGCTGTGATTAATGGCATCACGAATGGAATTGATGTTGATGAGTGGAATCCAGCTTCAGACAAACATGTCCCATTCCAGTATTCTGTAGAGGACCTTTCTGGAAAGGCAAAATGCAAGGCAGCTCTACAATTGGAGCTTGGACTTTCTGTTCGACCAGATGTGCCGCTGATTGGTTTCATTGGAAGATTGGACTACCAAAAAGGACTTGATCTTATTCAGTCAGCGCTTCCAGAACTGATGCAAGATGACGTCCAATTTGTTATGCTTGGCTCTGGAGATCCACTCATAGAGTCCTGGATGAAAATGTCAGAATCTACTTATAAAGACAGGTTCAGAGGCTGGGTTGGATTCAGTGTACCTTTTTCACACAAAATAACTGCAGGATGTGACATATTATTGATGCCATCGAGATTTGAACCCTGTGGCCTCAACCAGCTCTACGCAATGAGATATGGGACAGCTCCAGTTGTTCATTGCACTGGAGGTCTCCGGGATACTGTTGTGGACTTTGACCCTTTTGCTAATGAAGGTGAAGGTGTTGGCACGGGATGGAGATTTTCTCCGTTAACTAAGGAAGCTATGCTGGGGACATTGAGGATAGCTATCGAAACGTATCGGCGATACAAATCTTCATGGGAAGGGATCATGAAACGAGGAATGATACAAAACTACACATGGGATAATGCGGCTTCGCAATATGAACAAGTATTCGAGTGGGCTATGATAGATTCACCGTATGTCCCATAA___GGAATTTCAAAATTAAGGAATCAGAATTCCATTTTTTGTTTTCATCGTGATTCTGAGTCATACCAGTTATTCTAGTGCAGTCAGTGTTCTCATTCGAAGCATGATCGCATTGCAAGCTTTTTGTTTGAGCATTGAGAGGAAATAAACTGAACAGACAAGAAAACCTGTTAACATGTCTTGAACTTGAGATAAACTTTTTGTGACAAGCCCTGTGACAAATCACTCGTGTATAATTTAGGGTAAATTTTTTAAAATTCAAATGTTTAATTTTTGAAGTATGTGGTTTGTCTCCTTAAACCAGAGATGCTCCCTTTTGTAACGTTATATTCTCACAGAAAAGCCTCAATAGGCTTTCATGACTAGTTTCTAATGGAAATAAAGCTCATGTAGTCTGTTGTTTCAAAACTGTCTTCTTTTGTAATGGTTCATTCTTGGACCTTGAAGTCATTTATTCAATTTAAGCAAAGACATTGATATTACTGGATGGATTTATGAAAATGAAGATGTGCTTTTG

Fln Alignment:

sp_v1.1_unigene6548___PAKEGMAKEAIPTLVYGHQGIHETHEKEEHILPNREIVTGDDVAEGSRRTKISHNIIFVAAEVAPYSKTGGLGDVCGSLPIALAARGHRVMVISPRYLNGVTDKKYSGAFDVQCRIKIMCFGGEHQVAFFHEYRAGVDWVFVDHPSFHRPGNPYGDNFGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKCIFIANDWHASLVPVLIAARYRPYGVYRDARSILSIHNLAHQGVEPGTTYGNLGLPPDWYGSLEWVFPTWARKHALDRGEAVNHLKGAIVTADRILTVSKGYAWEITTTEGGWGLDELLQSRKAVINGITNGIDVDEWNPASDKHVPFQYSVEDLSGKAKCKAALQLELGLSVRPDVPLIGFIGRLDYQKGLDLIQSALPELMQDDVQFVMLGSGDPLIESWMKMSESTYKDRFRGWVGFSVPFSHKITAGCDILLMPSRFEPCGLNQLYAMRYGTAPVVHCTGGLRDTVVDFDPFANEGEGVGTGWRFSPLTKEAMLGTLRIAIETYRRYKSSWEGIMKRGMIQNYTWDNAASQYEQVFEWAMIDSPYV
Q0DEC8______________PDLEGLTEDSIDKTIF------VASEQESEIMDVKE----------QAQAKVTRSVVFVTGEASPYAKSGGLGDVCGSLPIALALRGHRVMVVMPRYMNGALNKNFANAFYTEKHIKIPCFGGEHEVTFFHEYRDSVDWVFVDHPSYHRPGNLYGDNFGAFGDNQFRYTLLCYAACEAPLILELGGYIYGQKCMFVVNDWHASLVPVLLAAKYRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPSTDKFLPYHYSVDDLSGKAKCKAELQKELGLPIRPDVPLIGFIGRLDYQKGIDLIKLAIPDLMRDNIQFVMLGSGDPGFEGWMRSTESGYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVENFNPFAEKGE-QGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPYV

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
405	40		60		1.0
1501		75		25	0.996473
1502			25	75	0.996473
1504	75		25		0.996473
1989		88		11	0.923564
1990	88	11			0.923564
1991	88		11		0.923564
1995		11	88		0.923564
1996	88	11			0.923564
2003	88			11	0.923564
2052		20	70	10	0.999998
2054	70		10	20	0.999998
2056			20	80	0.999996
2057			10	90	0.90298
2059		10	90		0.90298
2066			10	90	0.90298
2067			20	80	0.999996
2072	90	10			0.90298
2073	90	10			0.90298
2075		10	90		0.90298
2237			91	8	0.999807
2391	15	85			1.0
2460		61		38	1.0
2559		20		80	0.995493
2696		11		88	0.923564
2697		66		22	0.999999
2701	62		37		1.0
2745			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain