SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6519

Length: 1733 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6519

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SNARE_assoc domain containing protein	-	-	9.0e-19	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP89

Fln msg:

Fln protein: MKVEASKCSYIPSLKTMPAPRILTIDTARQRDEESGTTASPTSEKLHDGKPEGRFPLTRWEFVAALTIFMLFALGLLSIYATMPEAEYEILKLPHSIPDLRLLKDQLANYTRDYTAQFILGYCATYIFMQTFMIPGTIFLSLLAGALFGIIKGLALVLLTATAGASSCYFLSKLIGRPIAFWLWPERLRFFRAQVAQRRERLLNYMLFLRITPTLPNTFINLASPIVDVPYHIFFFATLFGLLPATYITVRAGLVLGELRSVADLYDFKTFAILFFIGFVSLAPTIVSRKQTHE*

Protein Length: 296

Fln nts: ATGGGGAAGGTTATTCGGTCGCTGTTACGTAATTTTCTCCGTGTATTTTTCTTGTCTGGAACGCTGAGTCCCATTTTACTGCTCGTAGATCGGGATCGGCACACAATAAACACGCTCAGATCCGCTTTCGTTTTTGAATTTCGCTTCGGACTTGGCTTGCCATTCTGCACCGATCTTGGTCGGACGGGTAAATGCAATGTGGAATGGATGATCTTCATTAAGTTTTTGCAGAAACTTAGGTTCGGATAAGGATCTACCTTTCATATTATGGTGTTTACTTGGGATGCTCAGAAATCAACTGAAGAATTCTTCGAAGGTCGTATGGATTATCACAGTGTAGTATGTGTTGCTGAATATTAATCCTTGCATTCTGTGAGGAGAATCAGAAAATCTTAAAATTGATTTATCACTATCAATTTGATGTCAATGAAGTCAGGCTTTAGAGGCTTTCCACCTTTATCAATGGTGTTACAATCCCACC_-_ATGAAGGTTGAAGCATCCAAGTGCTCATACATACCTTCCCTAAAGACAATGCCGGCACCCAGGATTCTAACAATTGACACTGCAAGGCAAAGGGATGAAGAGAGTGGGACGACTGCGTCACCAACTAGTGAAAAATTGCATGATGGGAAACCTGAGGGCAGGTTTCCTTTGACACGGTGGGAGTTTGTAGCTGCTCTTACAATTTTCATGTTATTTGCTTTAGGTCTCCTAAGTATATATGCGACAATGCCAGAAGCAGAGTACGAAATCCTTAAGCTTCCTCATAGTATTCCAGATCTCCGATTACTCAAAGACCAGCTTGCAAACTATACCAGGGACTACACAGCCCAGTTTATACTGGGCTATTGTGCCACGTACATTTTTATGCAGACATTTATGATTCCTGGTACCATATTCTTGTCACTGCTAGCAGGAGCACTCTTTGGAATAATCAAGGGTCTGGCCTTGGTTTTATTGACTGCAACTGCTGGTGCATCATCCTGTTATTTCTTGTCAAAATTGATTGGGAGGCCCATTGCTTTTTGGTTGTGGCCAGAGAGACTGAGATTTTTCCGAGCCCAGGTAGCTCAACGCAGGGAAAGGTTGTTGAACTATATGCTCTTCTTAAGGATAACACCAACGTTACCAAACACTTTCATAAATCTGGCATCGCCAATTGTGGATGTGCCTTATCACATTTTCTTCTTTGCAACATTATTTGGTCTTCTTCCAGCTACCTATATTACAGTTCGAGCTGGTCTAGTTCTTGGGGAGTTGAGGTCTGTGGCAGATTTGTATGATTTCAAAACATTCGCTATATTGTTTTTTATTGGCTTTGTATCTCTTGCTCCTACAATTGTAAGCAGGAAACAGACACATGAATAA___AATGGAGTTTATCTAAAATTGTGGGCTGTTGTCTGTGTTATCGTTGGTACAATGGGAATTGATTTGGTTCTTTAGCCCTCGACTAGGACAAACTAGTCGCTGAAAATTGTGCGAATGAGGCAGATTTGAAGGGCCTGTATAGGATGTTCAATCACATTTATCGAGGAAAGATTTTGCAAACTGTCTTGAGGTTTTATTGATTTCTGTCCGGTGTTTATTGGGCCAGTTTTGTGGATAAGCTATCTTTTTCACGGAAACAGTAATCATGCAATCTGAAGACAACACTTATGCATGCTTTGTAGCATGCTCTACTGATGTGCCATCTCAACATCTTATACTGTTTGATTTGCTGTTCGCTATATGAACA

Fln Alignment:

sp_v1.1_unigene6519___TMPAPRILTIDTARQRDEESGTTASPTSEKLHDGKPEGRFPLTRWEFVAALTIFMLFALGLLSIYATMPEAEYEILKLPHSIPDLRLLKDQLANYTRDYTAQFILGYCATYIFMQTFMIPGTIFLSLLAGALFGIIKXXXXXXXXXXXXXSSCYFLSKLIGRPIAFWLWPERLRFFRAQVAQRRERLLNYMLFLRITPTLPNTFINLASPIVDVPYHIFFFATLFGLLPATYITVRAGLVLGELRSVADLYDFKTFAILFFIGFVSLAPTIVSRKQTHE
B8LP89______________TMPASRILTIDTARQRDEESGNIASPTSEKLHDGKPEGRFPLTRWEFVAALTIFMLFAIGLLSIYVTMPEADYEILKLPHSIPDLRLLKDQLANYTRDYTAQFILGYCATYIFMQTFMIPGTIFLSLLAGALFGVTKGLALVLFTATAGASSCYFLSKLIGRPIAFWLWPEKLRFFRAQVAQRREKLLNYMLFLRITPTLPNTFINLASPIVDVPYHIFFFATFFGLIPATYITVRAGLALGELRSVADLYDSRTIAVLFFIGLVSVAPTIVSRKQTHE

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
667	25		75		0.996473
1229		9		90	0.999842
1230	86	4	8		0.999539
1232	77		22		1.0
1234			13	86	1.0
1236		90		9	0.999872
1237	80	3		6	1.0
1238		10	83	6	1.0
1240		3	6	90	0.997952
1241		87	9		1.0
1242	6		93		0.999153
1243	81		6	6	0.966481
1245		93		6	0.999153
1246		6		93	0.999153
1247	6		90	3	0.997073
1248	3	6	87	3	0.992016
1249		6	3	90	0.997073
1303		89		10	1.0
1357	16		83		1.0
1453		86		13	1.0
1467	85	14			1.0
1473	19	80			1.0
1475		85		15	1.0
1488		10	89		0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain