SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6509

Length: 2463 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6509
CGTCGTGACCTTGGCTGTCACTCAAGACTTAAAAGATACTCCCCTTTAACCAGGGTTTGAGCCCTCCCAGCTCGTCATTGTTCGAAGAAAACCCCGCACAGGTTTCACCATGACGGTCTTTTAAAATACCTCTTCTCAGAAATATTTAGCATCCGTCTCATAAAGTTGAATGTTTAGCCGTTTCCTTCTGTTCAAATCCTTCAGTTTCAGCCCCGTTTACCCCAGTTCCGTTCTGGATTACCCTCCGAGATCAAAAAAGCTATCTGTCTGAATTGCCAGGGATTTGGGGTTTTGAAGGTTGCTCAATCCGCTGTCCGTGGGAATAAATGGCATCTGCGCTGATTAGCGATCTCTGTGTTCCGAATTTGCACGGATTTTCGCAGGATAAGAAAAAGAGGCAACAGGGGTTGCGGTCAGGGTTTGCGCATTCTGTGAACTTGCATTTGGCTAAAGGTCGAATTGTACTGCAGAGTAGAAGGATAAAATGCAATGCCAGCGTCGTGGAGGCCGACGCCATTGCTGAGGCAGAGAAAGCGGAAGATCCTTTTAAATCCCTGAGTCAAGTGTGTGCAGTGCTGGGAAGTCAGTGGGGTGACGAAGGAAAGGGCAAGCTCGTTGACGTTTTAGCACAGCGCTATGATATTGTGGCCCGTTGTCAGGGAGGGGCAAATGCAGGTCACACCATATACAATAGCGAGGGAAAGAAATTTGCTCTTCACCTTGTCCCTTCTGGAATACTCAATGAAAAGGCCCTATGCGTTATTGGGAATGGAGCCGTTGTGCATCTTCCAGGACTATTTGAAGAGATAGAGGGGCTTGAGTCTAATGGAGTTTCTTGCAAAGGAAGACTGTTGATTTCTGACCGTGCTCATTTACTATTTGATTTCCATCAAATTATTGATGGAATGAGAGAAGCAGAACTTGCAGGGTCGTTAATTGGAACGACAAAAAGAGGGATTGGTCCTTGCTATGCAAGCAAGGCAATCCGGAATGGCATTCGGGTAAGTGATTTGAGGCACATGGATACATTTCCTGAGAAGTTGGATATTCTTTTGCATGATGCGGCATCCCGTTTTAAAGGCTTTGAGTATAGTAAAAGCATGTTACAGACTGAAGTGGAGCATTACAAGAGATATTCTGAGCGAATAGAACCTTATATTACTGACACTGTTCATTTGATGAATGATGCATTCTCAAGCGGGAAGAAGATTTTGGTTGAAGGCGGCCAGGCAACCATGTTAGATGTCGATTTTGGAACTTATCCATTTGTCACTTCTTCTAATCCATCTGCCGGTGGAATCTGTACTGGACTTGGTATTTCTCCAAGACATATTGGTGATATGATTGGTGTGGCTAAAGCATACACAACAAGAGTTGGTTCAGGTCCTTACCCGACAGAACTCTTGGATGAAGCGGGTGAAGATCTTCGATCAGCTGGACATGAATATGGCACCACAACTGGCCGGCCTCGTCGTTGTGGTTGGCTAGATCTGGTTGCACTTAAATATTCTTGTCAAATCAATGGTTTCTCAGCACTTAATCTGACAAAGCTTGACGTACTTTCTGGGTTATCTCGAATTAGGCTTGGGGTAACCTATAAAGGGCCTGATGGAAATGTGTTGAAATCTTTTCCTGCGGACCTTGACCTTCTGCAAAAAGTAGAGGTTATTTATGAAGATCTGCCTGGATGGCAGGCTGATATATCTAAAGTGAGAAGCTATCAAGACTTACCATCTGCTGCTTGCCTCTATGTGGAAAGGATCGAGAGTTTACTTGGAATACCAATCGATTATATTGGTGTTGGGCCAGGCCGTGATGCTTTAATAGTGAAGTAATAGGATCAACAGATTTTAAAGTCATCCCATGGAGTTTGCTGTCCAAGAAGCAGGTCAAAAACATGCATGGGAACTTTTAATGGCCTAACATTCCCTGTGTCATTTTTGGCTTTTGTGACTTTTTTATATCAGTCCCTTGTCCAGAACACTTTGGTTAGTCTAAGCAGGAATAAATTCAAGAAATTATAGGCTCTTGTTTTCTACAATACATAAGCGTTTGATGACAGAGAGGTATTAGTAACTCGTCACTGCGAAACTGAAAAAGGGTACATAACCAACAAATCATACTACCGTATCTGAAGAAAAAGCAGCAGCTAAAAAGAGAAATTATACTAATGCATATATAGTTTACTTGCATGATAATGATGTGTTTTCAGCTATAAAACACTGTTTGCAGTGGCTGGTAAAACTCAGCTAGTGCAATTGTGTTGGATAATGAAATTTTTCATCATCTCCTGATTTTCTGCCACTATTTCACCACTGGTTGATAAACTCACAGTGTTTCTAGATGATATTTTCAAGATTCTTGGAATTAGTATCCAGTTAACGCCCAAGGGTCGTAAAAAGGAATGTCAAGCATGTATTAAAAGGTTCATGATGATAATGGGTTCCATGACCAGTGAAGGTC

Ace file of the UniGene sp_v1.1_unigene6509

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Adenylosuccinate synthetase 2, chloroplastic n=1 Tax=Ricinus communis RepID=PURA2_RICCO	-	-	77%
FL-Next	sp=Adenylosuccinate synthetase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	adenylosuccinate synthetase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenylosuccinate synthase.	EC:6.3.4.4	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	87%
Blast2go	Alanine, aspartate and glutamate metabolism	00250	87%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	AMP biosynthetic process	GO:0006167	Biological Process	87%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	87%
Blast2go	adenylosuccinate synthase activity	GO:0004019	Molecular Function	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	apoplast	GO:0048046	Cellular Component	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8A1

Fln msg: your sequence is longer than subject: 503 - 309

Fln protein: MASALISDLCVPNLHGFSQDKKKRQQGLRSGFAHSVNLHLAKGRIVLQSRRIKCNASVVEADAIAEAEKAEDPFKSLSQVCAVLGSQWGDEGKGKLVDVLAQRYDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILNEKALCVIGNGAVVHLPGLFEEIEGLESNGVSCKGRLLISDRAHLLFDFHQIIDGMREAELAGSLIGTTKRGIGPCYASKAIRNGIRVSDLRHMDTFPEKLDILLHDAASRFKGFEYSKSMLQTEVEHYKRYSERIEPYITDTVHLMNDAFSSGKKILVEGGQATMLDVDFGTYPFVTSSNPSAGGICTGLGISPRHIGDMIGVAKAYTTRVGSGPYPTELLDEAGEDLRSAGHEYGTTTGRPRRCGWLDLVALKYSCQINGFSALNLTKLDVLSGLSRIRLGVTYKGPDGNVLKSFPADLDLLQKVEVIYEDLPGWQADISKVRSYQDLPSAACLYVERIESLLGIPIDYIGVGPGRDALIVK*

Protein Length: 504

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGACTTAAAAGATACTCCCCTTTAACCAGGGTTTGAGCCCTCCCAGCTCGTCATTGTTCGAAGAAAACCCCGCACAGGTTTCACCATGACGGTCTTTTAAAATACCTCTTCTCAGAAATATTTAGCATCCGTCTCATAAAGTTGAATGTTTAGCCGTTTCCTTCTGTTCAAATCCTTCAGTTTCAGCCCCGTTTACCCCAGTTCCGTTCTGGATTACCCTCCGAGATCAAAAAAGCTATCTGTCTGAATTGCCAGGGATTTGGGGTTTTGAAGGTTGCTCAATCCGCTGTCCGTGGGAATAA_-_ATGGCATCTGCGCTGATTAGCGATCTCTGTGTTCCGAATTTGCACGGATTTTCGCAGGATAAGAAAAAGAGGCAACAGGGGTTGCGGTCAGGGTTTGCGCATTCTGTGAACTTGCATTTGGCTAAAGGTCGAATTGTACTGCAGAGTAGAAGGATAAAATGCAATGCCAGCGTCGTGGAGGCCGACGCCATTGCTGAGGCAGAGAAAGCGGAAGATCCTTTTAAATCCCTGAGTCAAGTGTGTGCAGTGCTGGGAAGTCAGTGGGGTGACGAAGGAAAGGGCAAGCTCGTTGACGTTTTAGCACAGCGCTATGATATTGTGGCCCGTTGTCAGGGAGGGGCAAATGCAGGTCACACCATATACAATAGCGAGGGAAAGAAATTTGCTCTTCACCTTGTCCCTTCTGGAATACTCAATGAAAAGGCCCTATGCGTTATTGGGAATGGAGCCGTTGTGCATCTTCCAGGACTATTTGAAGAGATAGAGGGGCTTGAGTCTAATGGAGTTTCTTGCAAAGGAAGACTGTTGATTTCTGACCGTGCTCATTTACTATTTGATTTCCATCAAATTATTGATGGAATGAGAGAAGCAGAACTTGCAGGGTCGTTAATTGGAACGACAAAAAGAGGGATTGGTCCTTGCTATGCAAGCAAGGCAATCCGGAATGGCATTCGGGTAAGTGATTTGAGGCACATGGATACATTTCCTGAGAAGTTGGATATTCTTTTGCATGATGCGGCATCCCGTTTTAAAGGCTTTGAGTATAGTAAAAGCATGTTACAGACTGAAGTGGAGCATTACAAGAGATATTCTGAGCGAATAGAACCTTATATTACTGACACTGTTCATTTGATGAATGATGCATTCTCAAGCGGGAAGAAGATTTTGGTTGAAGGCGGCCAGGCAACCATGTTAGATGTCGATTTTGGAACTTATCCATTTGTCACTTCTTCTAATCCATCTGCCGGTGGAATCTGTACTGGACTTGGTATTTCTCCAAGACATATTGGTGATATGATTGGTGTGGCTAAAGCATACACAACAAGAGTTGGTTCAGGTCCTTACCCGACAGAACTCTTGGATGAAGCGGGTGAAGATCTTCGATCAGCTGGACATGAATATGGCACCACAACTGGCCGGCCTCGTCGTTGTGGTTGGCTAGATCTGGTTGCACTTAAATATTCTTGTCAAATCAATGGTTTCTCAGCACTTAATCTGACAAAGCTTGACGTACTTTCTGGGTTATCTCGAATTAGGCTTGGGGTAACCTATAAAGGGCCTGATGGAAATGTGTTGAAATCTTTTCCTGCGGACCTTGACCTTCTGCAAAAAGTAGAGGTTATTTATGAAGATCTGCCTGGATGGCAGGCTGATATATCTAAAGTGAGAAGCTATCAAGACTTACCATCTGCTGCTTGCCTCTATGTGGAAAGGATCGAGAGTTTACTTGGAATACCAATCGATTATATTGGTGTTGGGCCAGGCCGTGATGCTTTAATAGTGAAGTAA___TAGGATCAACAGATTTTAAAGTCATCCCATGGAGTTTGCTGTCCAAGAAGCAGGTCAAAAACATGCATGGGAACTTTTAATGGCCTAACATTCCCTGTGTCATTTTTGGCTTTTGTGACTTTTTTATATCAGTCCCTTGTCCAGAACACTTTGGTTAGTCTAAGCAGGAATAAATTCAAGAAATTATAGGCTCTTGTTTTCTACAATACATAAGCGTTTGATGACAGAGAGGTATTAGTAACTCGTCACTGCGAAACTGAAAAAGGGTACATAACCAACAAATCATACTACCGTATCTGAAGAAAAAGCAGCAGCTAAAAAGAGAAATTATACTAATGCATATATAGTTTACTTGCATGATAATGATGTGTTTTCAGCTATAAAACACTGTTTGCAGTGGCTGGTAAAACTCAGCTAGTGCAATTGTGTTGGATAATGAAATTTTTCATCATCTCCTGATTTTCTGCCACTATTTCACCACTGGTTGATAAACTCACAGTGTTTCTAGATGATATTTTCAAGATTCTTGGAATTAGTATCCAGTTAACGCCCAAGGGTCGTAAAAAGGAATGTCAAGCATGTATTAAAAGGTTCATGATGATAATGGGTTCCATGACCAGTGAAGGTC

Fln Alignment:

sp_v1.1_unigene6509___MREAELAGSLIGTTKRGIGPCYASKAIRNGIRVSDLRHMDTFPEKLDILLHDAASRFKGFEYSKSMLQTEVEHYKRYSERIEPYITDTVHLMNDAFSSGKKILVEGGQATMLDVDFGTYPFVTSSNPSAGGICTGLGISPRHIGDMIGVAKAYTTRVGSGPYPTELLDEAGEDLRSAGHEYGTTTGRPRRCGWLDLVALKYSCQINGFSALNLTKLDVLSGLSRIRLGVTYKGPDGNVLKSFPADLDLLQKVEVIYEDLPGWQADISKVRSYQDLPSAACLYVERIESLLGIPIDYIGVGPGRDALIVK
D5A8A1______________MREAELAGSLIGTTKRGIGPCYASKVIRNGIRVSDLRHMDTFPEKLDILLHDAASRFKGFEYSKSMLQTEVEHYKRYSERVEPYIAVTVHLMHDAFSSGKRILVEGGQATMLDVDFGTYPFVTSSNPSAGGICTGLGIAPRHIGDLIGVAKAYTTRVGSGPYPTELLDEAGENLRSAGYEYGTTTGRPRRCGWLDLVALKYSCQINGFSTLNLTKLDVLSGLSRIRLGVAYKGPDGNVLPSFPADLDLLQQVEVIYENLPGWQADISSVRRYQDLPSAACLYVERIESLLGIPINYIGVGPSRDALIVK

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
1145	88		11		0.923564
1252		14		85	0.993533
1253			14	85	0.993533
1258	85	14			0.993533
1262	85		14		0.993533
1263			14	85	0.993533
1265		85		14	0.993533
1266	85		14		0.993533
1268		14		85	0.993533
1269	14			85	0.993533
1270		14	85		0.993533
2042	12			87	0.992554
2043	85		14		0.993533
2044	14	85			0.993533
2046		14		85	0.993533
2047	83		16		0.994512
2049	16		83		0.994512
2059	80		20		0.995493
2080		75		25	0.996473
2081	25		75		0.996473
2107	60		40		1.0
2115		60		40	1.0
2142	80	20			0.995493
2148	40		60		1.0
2151			60	40	1.0
2159			80	20	0.995493
2172	85	14			0.993533
2173	85		14		0.993533
2178		14		85	0.993533
2179	83	16			0.994512
2183	83		16		0.994512
2185		16		83	0.994512
2191		16		83	0.994512
2192	16		83		0.994512
2197	80		20		0.995493
2215		50		50	1.0
2232		75		25	0.996473
2239		25		75	0.996473
2247		75		25	0.996473
2283		33		66	0.997452
2301		66	33		0.997452
2322		33		66	0.997452
2336	33		66		0.997452
2345	33		66		0.997452
2346	66	33			0.997452
2358	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain