SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6493

Length: 1349 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6493

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to Methyltransferase-like protein KIAA1627	-	-	5.0e-28	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	protein	-	-	0.0	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	MT-A70	IPR007757	-	0.0	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPF6

Fln msg: your sequence is shorter than subject: 267 - 804

Fln protein: SHTLFQHSKEHCLMGIKGTVRRSTDGHIIHANIDTDIIIAEEPPHGSTTKPEDLYRIIEHFALGRRRLELFGEDHNIRAGWLTVGKGLTSSNFNIESYTKNFFDKDGKLWQGGAGRNPPPDAPHLVGTSPEIESLRPKSPPQKNQQQQQANSVSQTAANSTNKKTSATSPGPPQNSQASATATPITGSTQEIQASNASATLPALPVSEIARSGGSAPVIEQRPIPILPSTSRTSGIGSRVGLEVEGGMEDERFLDSGTPGTMDLQK*

Protein Length: 268

Fln nts: ATTCTCACACATTATTCCAGCATTCAAAGGAGCACTGCTTGATGGGCATAAAGGGGACGGTTAGGCGGAGTACAGATGGACATATAATTCATGCCAACATTGATACAGATATAATTATTGCTGAAGAACCTCCTCATGGATCAACTACAAAGCCCGAGGATCTGTATCGTATAATTGAACACTTTGCTTTGGGTCGTCGACGTCTAGAGCTCTTTGGTGAAGACCATAATATTCGTGCAGGTTGGCTTACTGTTGGCAAAGGGCTGACATCGTCAAACTTTAACATAGAGAGTTACACGAAGAACTTTTTTGACAAAGATGGGAAGCTTTGGCAAGGTGGAGCTGGCCGTAACCCGCCTCCTGATGCTCCTCACCTTGTTGGTACCTCGCCTGAGATAGAAAGTCTCCGACCAAAATCCCCACCACAAAAGAACCAACAGCAGCAGCAGGCAAATTCTGTCTCGCAAACTGCGGCAAATTCTACAAATAAAAAAACATCGGCCACCTCTCCAGGCCCTCCTCAAAATTCTCAAGCATCAGCCACTGCAACACCCATTACTGGATCGACTCAGGAAATTCAAGCATCCAATGCCTCGGCTACATTACCTGCATTGCCTGTTTCAGAAATTGCCAGGAGTGGAGGTTCTGCTCCAGTAATTGAACAGAGGCCAATTCCTATACTTCCCAGCACATCCAGAACATCAGGTATAGGATCAAGAGTTGGGTTAGAGGTTGAAGGTGGCATGGAGGATGAAAGGTTTTTGGATTCAGGGACACCTGGTACAATGGACTTGCAAAAATAA___AATGAGTTTTCATTTGTGAGTGAGATGCGGATATTTTATGCATAGGCACTTCATGGAGATGTGGTTTATAAACGCCATCTTAATATCTGTACCTATTACTTTCAAAATATGAAGGCAAGATGGAAAGCTACTCATCTGTTGTGAAGTCAGAATGTTGGTAGGGGTTGGGTTCTGAAAGTAGAAACTTTTTGATTGGTTTAATTAAACGAGGGAATTTGCCTGGTTTCCCTTTTCCTTCCATTGCCTGCTATTTGATGCCTATACTAAGATTCGGTCTCTTTATTTGAAGATTCAAATTTCCATCGGTTAAATTATGTATTAAAATATCCTCACTTAACTTCAGTTTTGCAGAAGTGTAATTGTTTCAATTTTGTTTAATGTACATACTGTGTATTGATGTAAATATGGAAAGTAATAACTCAATTCATTCTTCAATTCCTTTCACCTCTCCTACTGTACTATCCGACTGCACGGGATAGAAGTTTTCAGTTATCTAATGAGTTGCATTTCTTAACATTTGTCTTTATTATTGAATACTTGATTCGT

Fln Alignment:

sp_v1.1_unigene6493___HSKEHCLMGIKGT--VRRSTDGXXXXXXXXXXXXXXEEPPHGSTTKPEDLYRIIEHFALGRRRLELFGEDHNIRAGWLTVGKGL
B8LPF6______________HSKEHCLVGIKGDPEVNRNIDTDVLVSEVRE-----------TSRKPDEMYPMLERISPRTRKLELFARMHNTHAGWMSLGNQL

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
621		12		87	0.992554
622			12	87	0.992554
625	87			12	0.992554
628	87	12			0.992554
629	87	12			0.992554
633		87	12		0.992554
635	87			12	0.992554
637		12	87		0.992554
639		12	87		0.992554
642		12	87		0.992554
655	88	11			0.923564
659	88	11			0.923564
660			11	88	0.923564
666	88	11			0.923564
667			88	11	0.923564
668	88			11	0.923564
673	88			11	0.923564
674	88		11		0.923564
676		11		88	0.923564
677	11	88			0.923564
680	88	11			0.923564
681	11			88	0.923564
737		10	90		0.90298
738	90		10		0.90298
739	90			10	0.90298
740		10	90		0.90298
744		10	90		0.90298
746	90			10	0.90298
750	88	11			0.923564
751			88	11	0.923564
755		14	85		0.993533
757	85	14			0.993533
758	85			14	0.993533
759		14	85		0.993533
760	14		85		0.993533
817	85	14			0.993533
824	87		12		0.992554
878		88		11	0.923564
1040		60	40		1.0
1205		20		80	0.995493
1237		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
438	449	CAG CAG CAG CAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain