SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6473

Length: 1871 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6473

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative multiple stress-responsive zinc-finger protein [Citrus hybrid cultivar]	-	-	2.99878e-43	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, AN1-type	IPR000058	-	0.0	69%
Blast2go	Zinc finger, A20-type	IPR002653	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAI0

Fln msg:

Fln protein: MAQESKKRDHDETGCQPPEGPLLCANNCGFFGSAATMNFCSKCYRDMVLKQAKAKASSSTSSVEHSNDNIAKLAEVSEPAFQLTNQAELEGLPGSSNGESGQAEGQERAKQVPTRCNCCKKRVGLTGFNCRCGNTFCSLHRYSDKHNCPFDYRAAGRAAIEKANPVVKAEKVDKF*

Protein Length: 177

Fln nts: GACCTAAAAATTCCAAGAAGGTTAACCTTGTGAAGTTTCCTTTATTCAATCGTCTGTTGGGAGAGTTGAATCCGTCTTCCCCTATAATTCATTCGATTGAGAGGGAGTCCCTTTAATTCTATGCGTTCGATCGACCTTGTGGCCAGAAATTCGGATTTTTTTGGGAGAAAGGGTTGGATCCCGCGGCTTATTTACGGCTGGATTTGTTTAGATCCGTGAGGGTTTTCTGAAAGGAGGAGATTTTATTCATTCGGCGTGGATGCGTCTAGGATGGACCTGGTAGCTTTTCTAATATCCTTCCGACTGTACCAAAATTGGAGCGGAACAGCCGTCTTTAGCAGTTTTTAGGCATAAAACAGCTGAATCGGATCAGAACACGCCAGCAACCTGTAGAACCGTTGCGGAACTTGAGATTTTGAGGCTTAGTTCAAGGGAATCCGGATCCTATTGAAGGTCAGGTCTAAACGGCAGGTGGAATTAAGGTGCTAAACTGAAGAAATGCAGAATTAACAGACGAAACTGCCATCTCTTAAAGGCATCTCTGATAAGTTCTATTTCAGAACCCTGTTGTGTTTCCCTGAGTCTTTAAATGCCGAAGCGGATTAACACCGTGGAATTGAAGTTTTAACGCTTGAATGCGATCGCTACAGATCCAGTAATTTGATTATTTTTTTAACAAATACATCTTCCTATTCTCAGTTTTCATTAAATTATTTAGAGATA_-_ATGGCTCAAGAAAGCAAGAAAAGAGATCACGATGAGACTGGTTGCCAACCTCCCGAAGGGCCTCTTCTGTGTGCGAACAATTGTGGATTTTTCGGAAGTGCGGCTACAATGAATTTTTGCTCCAAATGCTACAGAGATATGGTATTGAAGCAGGCCAAAGCCAAGGCTTCGTCCTCGACTTCATCAGTCGAACATAGCAATGACAATATTGCGAAGCTGGCTGAGGTTTCTGAACCCGCCTTCCAGTTAACTAATCAGGCAGAATTGGAGGGTTTGCCGGGCTCTTCCAATGGAGAATCAGGCCAGGCAGAAGGACAAGAGAGAGCAAAGCAGGTCCCGACCCGTTGCAATTGTTGCAAGAAACGTGTTGGATTGACAGGCTTCAATTGCCGTTGTGGGAACACCTTTTGTTCTTTGCACCGCTATTCGGACAAGCATAATTGCCCCTTTGATTACAGGGCAGCGGGCCGAGCGGCCATTGAGAAAGCAAATCCTGTTGTGAAGGCGGAAAAGGTAGATAAGTTTTAG___TTTGTTTCATATGTCAGCCAATCTATGAAGGTAAGCTAAACCTTCAGAAACAGATTAACAGCCTTTTCTGCTATGGTGTGTGATGATGATTAAAGAGTGGACATCTTTAAGATTTCATTTTATAGTTTGCTTTCTTGGAGCCATAAGTTTTTTGTTTGGTGTCTGTGGATTGGATATCTTTCTAAGGATGGCTATCTACACATACTTGTCTTGTGAGTAATCTTGTACAGTAATATTTTAGAGGGTCTAGGCTATATTTTCCTGATTTACTCTGAAGTCTAACAGCTACATGTTTTCGAGTTAGCAGGATTATATCCTATTAATCTATTTAACTTGTCTATGTCCATGGAAGAATCAAGTATCATCAGTAGTTAACAACATCAACCTATCATCATTTTTTACTTGTATTTTGTTTCTGAATCTTTTGGATACACTGCTTGTATTTAGAATTTAAATGTTCAGTACTTGCCAATTTGAACCCCTTCAAAGCGAGTGACAGGCCTTAACTAAATAGGATCTGGCTATATGGATGTACTTAGTTACAACCTGATATGCCCTCCAGTTTTTTGAATGCGGCTGTTAAAGTAAGTTTTTTTGTGTAATATAAGGAGTATATTTTT

Fln Alignment:

sp_v1.1_unigene6473___MAQESKKRDHDETGCQPPEGPLLCANNCGFFGSAATMNFCSKCYRDMVLXXXXXXXXXXXXXVEHSNDNIAKLAEVSEPAFQLTNQAELEGLPGSSNGESGQAEGQERAKQVPTRCNCCKKRVGLTGFNCRCGNTFCSLHRYSDKHNCPFDYRAAGRAAIEKANPVVKAEKVDKF
D5AAI0______________MAQESKKRDHDETGCQPPEGPLLCANNCGFFGSAATMNFCSKCYRDTVLKQAKASSSTSS--VEHSNDNIAKPTEVSEPAFQLTNQAESEGLPGSSNGESGQAEGQERAKQVPIRCNCCKKRVGLTGFNCRCGNTFCSLHRYSDKHNCPYDYRAEGRAAIEKANPVVKAEKVDKF

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
47		25		75	0.996473
51	75		25		0.996473
60	20			80	0.995493
61		20		80	0.995493
62		20	80		0.995493
63			80	20	0.995493
64			80	20	0.995493
65	80		20		0.995493
67	80	20			0.995493
68			80	20	0.995493
69			20	80	0.995493
71		20	80		0.995493
73	80	20			0.995493
76	20	80			0.995493
84		80		20	0.995493
148	66		33		1.0
215	83	16			0.999991
216			16	83	0.999991
217		83		16	0.999991
224		16	83		0.999991
225		16	83		0.999991
228			16	83	0.999991
229			16	83	0.999991
233	83			16	0.999991
234	83	16			0.999991
1069		90	10		0.90298
1074	10		90		0.90298
1075		90		10	0.90298
1077	90			10	0.90298
1078		10		90	0.90298
1080			90	10	0.90298
1081		10		90	0.90298
1082			10	90	0.90298
1084		90		10	0.90298
1087		10	90		0.90298
1088	77			22	0.999999
1089	77	22			0.999999
1092			88	11	0.923564
1093		11		88	0.923564
1094	11		88		0.923564
1113	84	15			0.999986
1472			64	35	1.0
1740		33		66	0.997452
1741	66		33		0.997452
1742	66	33			0.997452
1744			33	66	0.997452
1745		66		33	0.997452
1751	33		66		0.997452
1753	33	66			0.997452
1754			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain