SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6470

Length: 272 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene6470
CTTGTTTATGAGTATGTCCCAAATGGTACTTTGGAGGATCATCTTCACGGGGAAAGGAAGAAGGACAAAGGTCTAAATTGGGATACCCGTCTGAAAATTTGCATAGAAACTGCCCAGGCTCTGGCATTTCTTCATTGCCTTGAACCACCTATAATACACAGAGATGTAAAATCTCCGAACATTTTACTGGACGAGGACTTGCATGTCAAAGTAGCTGATTTTGGGCTTTCCAGATTTGTGCCATTCGATGTAACCCATGTTTCCACTGCTCC

Ace file of the UniGene sp_v1.1_unigene6470

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os01g0689900 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5N7Q8_ORYSJ	-	-	7.0e-30	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	wall-associated kinase 4-like	-	-	1.30427e-29	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	1.30427e-29	78%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	1.30427e-29	78%
Blast2go	Protein kinase-like domain	IPR011009	-	1.30427e-29	78%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	1.30427e-29	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Distance to subject end: 235 aas, your sequence is shorter than subject: 90 - 656

Fln protein: LVYEYVPNGTLEDHLHGERKKDKGLNWDTRLKICIETAQALAFLHCLEPPIIHRDVKSPNILLDEDLHVKVADFGLSRFVPFDVTHVSTA

Protein Length: 91

Fln nts: CTTGTTTATGAGTATGTCCCAAATGGTACTTTGGAGGATCATCTTCACGGGGAAAGGAAGAAGGACAAAGGTCTAAATTGGGATACCCGTCTGAAAATTTGCATAGAAACTGCCCAGGCTCTGGCATTTCTTCATTGCCTTGAACCACCTATAATACACAGAGATGTAAAATCTCCGAACATTTTACTGGACGAGGACTTGCATGTCAAAGTAGCTGATTTTGGGCTTTCCAGATTTGTGCCATTCGATGTAACCCATGTTTCCACTGCTCC

Fln Alignment:

sp_v1.1_unigene6470___LVYEYVPNGTLEDHLHGERKKDKGLNWDTRLKICIETAQALAFLH--CLEPPIIHRDVKSPNILLDEDLHVKVADFGLSRFVPFDVTHVST
C0PRI9______________LVYEFVPNDTLEHHLHG--KGQPNMEWPTRLKIAIGAARGLAYLHEDCY-PKIIHRDIKASNILLDSNFEAKVADFGLAKLASEDFTHVST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain