SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6462

Length: 894 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6462

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative NRAMP metal ion transporter 1 n=2 Tax=Oryza sativa RepID=Q653V6_ORYSJ	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	nramp transporter	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	iron ion transmembrane transport	GO:0034755	Biological Process	0.0	85%
Blast2go	iron ion transmembrane transporter activity	GO:0005381	Molecular Function	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Natural resistance-associated macrophage protein	IPR001046	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLH7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 221 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 272 - 518

Fln protein: MAPPAGSNSERPQFITSSEMAEERNTNTMLLMDNVESDQIVVSERRSWKNLFSYIGPGFLVSIAYIDPGNFETDLQAGAKYKYELLWVILVASCAALLIQSLAANLGVVTGKHLAEHCKTEYPRKTNFVLWIIAEVAIVACDIPEVIGTAFALNMLFSIPVWCGVLITGLSTLILLALQQYGVRKLELLIAVLVIIIAGCFLGELGYAKPKSTEVLEGLFVPLLKGNGAMGHAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRF*

Protein Length: 273

Fln nts: ATTGGGGATCCCATCTTAAATCCTTTCAGACAGACAGGCAGGATCGACC_-_ATGGCTCCTCCCGCAGGTTCGAACTCAGAACGTCCGCAGTTCATTACAAGTTCGGAAATGGCCGAGGAGCGCAACACAAACACAATGCTTCTTATGGACAATGTCGAATCCGATCAAATCGTTGTCTCTGAAAGACGCAGCTGGAAGAACTTGTTTTCATACATCGGTCCTGGGTTTCTGGTGTCAATAGCCTATATAGATCCTGGGAACTTTGAGACTGATTTACAGGCGGGGGCAAAGTACAAATATGAGCTGCTTTGGGTCATTCTGGTGGCCTCATGTGCTGCTCTGCTCATTCAGTCACTGGCAGCTAACTTGGGAGTTGTGACAGGAAAGCATCTTGCAGAGCACTGCAAAACTGAATATCCAAGGAAAACAAATTTTGTATTATGGATAATTGCTGAGGTTGCTATTGTAGCATGTGATATTCCTGAAGTAATTGGAACAGCATTTGCACTGAATATGCTTTTCAGTATCCCTGTATGGTGTGGAGTTCTCATTACAGGGTTGAGTACCCTGATTCTTCTTGCTTTACAGCAATATGGGGTGCGTAAACTTGAGCTCTTAATAGCGGTTCTTGTGATTATTATAGCTGGTTGCTTCCTTGGAGAACTAGGCTATGCCAAGCCAAAATCCACAGAAGTTTTGGAAGGATTATTTGTTCCTTTGTTGAAAGGCAATGGTGCAATGGGACATGCAATATCTCTTCTTGGTGCTATGGTCATGCCGCACAACCTATTTCTTCATTCAGCTTTGGTGTTGTCAAGGAAAATACCTCGCTCAGTTCGTGGTATAAAAGAGGCTTGCAGGTTTTAaCTCATTGAGAGTGCATTCGCCTTGACTGT

Fln Alignment:

sp_v1.1_unigene6462___ITSSEMAEERNTNTMLLMDNVESDQIVVSERRSWKNLFSYIGPGFLVSIAYIDPGNFETDLQAGAKYKYELLWVILVASCAALLIQSLAANLGVVTGKHLAEHCKTEYPRKTNFVLWIIAEVAIVACDIPEVIGTAFALNMLF--SIPVWCGVLITGLSTLILLALQQYGVRKXXXXXXXXXXXXXGCFLGELGYAKPKSTEVLEGLFVPLLKGNGAMGHAISLLGAMVMPHNLFLHSALVLSRKIPRSVRG-IKEACRF*LIESAFAL
B8LLH7______________IDGEERAYESSEKIAVNIDDPNGEDEGYVPPFSWRKLWLFAGPGFLMSIAFLDPGNLEGDLQAGAVAGYSLLWILMWATGMGLIIQLLAVRVGVTTGCHLAELCREEYPLWSRLILWVMAEIALIGADIQEVIGSAIALKILTNGALPLWAGVLITGLDCFTFLFLENYGVRKLEALFGVFISLMAVSFAWMFGETNPSGKELLLGLLIPRINSN-AVRQAVSVVGCIIMPHNIFLHSALVQSRMVDTTRKGRVQEALNYFSIESSFAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain