SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6431

Length: 1749 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene6431 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	longevity assurance factor, putative	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	response to molecule of fungal origin	GO:0002238	Biological Process	72%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	72%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	TRAM/LAG1/CLN8 homology domain	IPR006634	-	0.0	72%
Blast2go	Longevity assurance, LAG1/LAC1	IPR016439	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUL2

Fln msg:

Fln protein: MEAIWRWEGLPVVKDFYLAIYIAFACVAIRFFLDVTLYQKLAIWLLRRETLTLKLTKIKQLKITKCTESMWKLTYYLGVQIFIFLISYEEPWFGDRKQLFKGWPDHTIKFPLKLFYMCQCGFYVYSIAALLMWETRRKDFTIMMSHHVITVFLIGYSYITRFFRSGSIVLALHDTSDVFMETAKLFKYCGKEYAASTSFGLFAFSWLFLRLIYFPFWIIWSSSYDLIQYLALPATYYIWIYYVFNTMLLTLLVFHIYWWILICSMVLKQLKNKGKVGEDIRSDSEDGE*

Protein Length: 290

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTACTGTTCCATCCCCTACCGCTTGAGAAATTTCGATTCTTGGTCTTGGCAACGGCGGCTGAAATTTATCCATTTGGATCGAAGCGCGGTATACACGCAAACTATACGCCCCGCCCTGTATCTGCGCACTGCAGGCCCTAATTCAATCTTCGCTCAGGAATTTTCACCGATCAGAATCCATCGGCGATGTGGTATTAACACTTTCGAGGGTTTCAAATGGGAAATGTGTTTGCTTTTCAAGCAATTCTTACCAGCACAGAGAGTTGGCAATACAAGGGATAGATAAGAGATGGTAATTCAGTGAGGCAGAGCTTCTTCTAGTGGTGTTCG_-_ATGGAGGCGATTTGGAGATGGGAAGGTTTGCCAGTGGTGAAGGACTTCTATCTGGCGATCTACATTGCATTTGCGTGTGTTGCAATCCGATTTTTTCTTGACGTTACGTTGTACCAGAAACTTGCCATCTGGCTTTTACGTAGGGAAACTTTGACGCTAAAGCTGACGAAAATTAAGCAACTGAAGATTACAAAATGCACGGAATCCATGTGGAAGTTGACATATTATTTGGGTGTCCAAATTTTTATTTTTCTTATTTCGTATGAGGAGCCTTGGTTTGGTGATAGAAAACAACTGTTTAAGGGGTGGCCAGATCACACTATCAAGTTTCCACTGAAACTTTTCTACATGTGCCAGTGTGGATTTTATGTTTATAGCATTGCTGCACTTCTCATGTGGGAAACTCGAAGGAAAGACTTTACTATCATGATGTCACATCATGTGATTACAGTGTTTTTGATTGGATATTCATACATTACTCGGTTTTTCCGCAGTGGTTCTATTGTATTGGCTTTGCATGATACAAGTGATGTATTTATGGAAACAGCAAAGCTCTTTAAGTATTGTGGCAAAGAGTACGCTGCTAGCACGAGCTTTGGGCTTTTTGCCTTTTCATGGCTTTTTCTACGCTTGATATATTTCCCATTCTGGATTATTTGGAGTTCAAGTTATGATCTTATTCAGTACCTAGCTCTTCCAGCCACTTATTACATATGGATCTATTATGTATTTAATACAATGCTTCTGACTCTCCTTGTGTTCCACATATATTGGTGGATACTCATATGTTCCATGGTTTTGAAGCAATTGAAAAATAAAGGGAAAGTTGGTGAAGATATTAGATCAGATTCTGAAGATGGAGAGTAG___CTGAAGCAGGACTATTTTGGGCATGTCCGGCAAAGGTATTGTGTTTGTCAGGCCTGTACAAGATCCAGAAGACCGTGGAATTCTTAGTCCAGAGATTTGATATCTGATTCAGTTGTATATTATGAAGACTGACTAGATTTTAAAATGTTGTGTTTTTGCTCTTGGATAGATTGGTATCATTCACGTATCAGCATCTCTAGGAAATAGGCTTTATGTAGTCATTTGGCCAAGTTCATCTTTTCTATTCTTTAAAATCAGAAGCATATCTGAAGATGTATCCAATAGCCCATACTCTAGCTTAGTGTCCACCGTTCCTGAGCTCATCAACATGCGGTTTATGTGCACTTGACTTCATATTTATAATTCAGCAACTTAAACAGAGAAAGCAGAAGATGCCACGTAAAGATAAATGCATCTGTATGATTCACATCGTTTATCTGGGTGAATGTAGCTCCAAGTTTTGAGGCTTCTATAACATTAAATGTTGAATATTGGTCAAAAAAACAATCAATTCTGAATATTAGT

Fln Alignment:

sp_v1.1_unigene6431___MEAIWRWEGLPVVKDFYLAIYIAFACVAIRFFLDVTLYQKLAIWXXXXXXXXXXXXXXXXXXXXXXTESMWKLTYYLGVQIFIFLISYEEPWFGDRKQLFKGWPDHTIKFPLKLFYMCQCGFYVYSIAALLMWETRRKDFTIMMSHHVITVFLIGYSYITRFFRSGSIVLALHDTSDVFMETAKLFKYCGKEYAASTSFGLFAFSWLFLRLIYFPFWIIWSSSYDLIQYLALPATYYIWIYYVFNTMLLTLLVFHIYWWILICSMVLKQLKNKGKVGEDIRSDSEDGE
A9NUL2______________MEAIWRREGLPEVTDFYLAIYIAFACVAIRFFLDVALYQKLAIWLLRRETSTLKLRKIKQLKITKCTESMWKLTYYFGVQAFIFLISYEEPWFGDRKQLFKGWPNHTIKFPLKLFYMCQCGFYVYSIAALLMWETRRKDFTIMMSHHVITVFLIGYSYITRFFRSGSIVLALHDTSDVFMETAKLFKYCGKEFAASTSFGLFALSWLFLRLIYYPFWIIRSSSYDLIKYLALPDTYYIWIYYVFNTMLLTLLVFHIYWWILICSMVLRQLKNKGKVGEDIRSDSEDGD

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
848		87		12	0.992554
903	40	60			1.0
905			60	40	1.0
906	60		40		1.0
908	60	40			1.0
910	60		40		1.0
913	40		60		1.0
917	60	40			1.0
919		40		60	1.0
923		40		60	1.0
929		66		33	0.997452
1141			83	16	0.994512
1559	46		53		1.0
1649	88	11			0.999937
1650	88	11			0.999937
1682		62		37	1.0
1692	35		64		1.0
1697	12	75	12		0.975346
1699		85	14		0.993533
1704		14	85		0.993533
1705	14		85		0.993533
1707	85	14			0.993533
1708		14	85		0.993533
1709		14	85		0.993533
1710		14	71	14	0.984337
1711		14	71		0.984337
1713		14		85	0.993533
1715	20		80		0.995493
1716	80	20			0.995493
1717	80		20		0.995493
1729	25			75	0.996473
1730	25		75		0.996473
1735	75	25			0.996473
1742	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain