SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6407

Length: 1312 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6407

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNase H family protein n=1 Tax=Asparagus officinalis RepID=Q2AA19_ASPOF	-	-	2.0e-13	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	rnase h family protein	-	-	1.66442e-22	51%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1H6

Fln msg: W1: There is no M at the beginning,

Fln protein: TSFELVYGLDVTLPVHLKLPAYQLLQNFSTNKDVVQNRIDQIVELDEARRTAFEAICKNQSNIKKSFDKCSRSRSLQVGDMVLLWDRRNEKPGKHKKFDSLWLGPYIIRDIAGPNSFYLSRLDGEPLDLPANGQMLKLFFRDDI*

Protein Length: 146

Fln nts: ATGGGCAAGAGATCTTGGGACAGCAAAATCAAGTATGCTTTGTGGGCATACATGATTACTAGGAGATTTTGCTGTAGACTTCTTTTGAATTAGTTTATGGCTTGGACGTTACCTTACCTGTGCACCTAAAATTGCCAGCTTATCAACTTCTCCAAAATTTTTCCACCAATAAAGATGTTGTTCAAAATAGGATAGATCAAATTGTGGAATTAGATGAGGCTCGTCGTACAGCTTTTGAGGCTATATGTAAAAATCAATCTAACATTAAGAAAAGCTTTGATAAATGCTCTCGATCTAGATCTTTGCAGGTTGGAGACATGGTTTTACTTTGGGATCGCAGGAATGAAAAACCGGGAAAACATAAGAAGTTTGACAGTTTGTGGCTGGGACCATACATCATTAGAGATATAGCTGGGCCGAACTCATTCTACTTGAGCAGATTGGATGGCGAACCACTTGATCTACCAGCAAACGGCCAAATGCTCAAGCTGTTCTTCAGAGATGATATCTGA___TGCCATGGGGCATCTTCTGTATTGTATTTCTATCCCTAATCCTTGTCTTTTCAGCATTTCATTTCTTAGGATTAGATTTACTTTTTATGTTTTTAGATAGTTAATAAATGAAGAGCTTTTATTTATTCTGTGCTTAATGTATGTGATGATTTTGGATGGACGCTACTTATTTTTATCTGTGTGTTGCGTGGATGCAGATTCTGGATTCTCACATTCCTACTGAGCAGCAATGTGTCCCCAAGTAGAGCCAGATGTTGACCACCACTGGTCAACTACCCATGCAGTACACACCCCTCTCTTTTGCAAATTAGGGGCAGCACCTGATCGAGATCATCCGTGCCATCTTTCAGTCATCAACAGCTAAATCTTTTTGTAAACCCAGTCTGCATGTATTAATTGTAAATAATCTTAGCAGACGTGAGTCATGAATGTAATTTGCCTAGGTGGACCTAACTTTCTGATGATAATCTACGTCCCGGAAGGTTTTTCGTCTCACCGATCCACGGATCGGCAGAGTTTTCCTTCAAACCTGACCCCAAAGCCGGGATGCATTTTGTCATTAGAACTTTAGGAGAATCCTAGTGTGTCAATCTGCTAGATTATAGTTGTGTCGCAGAACTGGGTAGTCTATGAGGGTCTGTACTAAGTGGGTTTGTCCCCTTGAGATGTATATTTGTAAAAGTCATGATGAATTGTGTCTTGAGGGTCGAAAAATGTTGTAAATCCCCTCATAAGTCCTAAGTCCTAGGTCCTAGGTGATGTCTCTGAAGGCTTAGTTCGATGATCCATTTTAAAATAGT

Fln Alignment:

sp_v1.1_unigene6407___LVYGLDVTLPVHLKLPAYQLLQNFSTNKDVVQNRIDQIVELDEARRTAFEAICKNQSNIKKSFDKCSRSRSLQVGDMVLLWDRRNEKPGKHKKFDSLWLGPYIIRDIAGPNSFYLSRLDGEPLDLPANGQMLK
A9P1H6______________MVYGTDVVLPINLALPVMKLWQDENEEPNPLTRRINQLIEVQQHKDAIDEKMQKYQDNMKLLFDRKARNRNFLPGDLVLKWDARKEDSGKNGKFDHIWYGPFKISSSEGNNSFLLENLDGKILNAPVNARFLK

SNPs (tot: 83)

Position	A %	C %	G %	T %	Probability
392	33	66			0.997452
398		66	33		0.997452
400	66		33		0.997452
411			80	20	0.995493
412	80		20		0.995493
414	80		20		0.995493
418	80		20		0.995493
447	40		60		1.0
483	25		75		0.996473
497		75		25	0.996473
502		75		25	0.996473
504	20			80	0.995493
505		80		20	0.995493
506	80		20		0.995493
507	20		80		0.995493
508	80		20		0.995493
517		40		60	1.0
551			10	90	0.90298
554		90		10	0.90298
559	90	10			0.90298
565	10		90		0.90298
574	10		90		0.90298
580		90		10	0.90298
589	11		88		0.923564
590	11		88		0.923564
605		16		66	0.988813
606		16		83	0.994512
612	16			83	0.994512
622		20		80	0.999996
626	90		10		0.90298
627	90		10		0.90298
643		10		90	0.90298
644		10		90	0.90298
645	90			10	0.90298
647		10		90	0.90298
650	10		90		0.90298
663	22		77		0.999999
682	11		88		0.923564
692		12		87	0.992554
712	80		20		0.995493
716	80			20	0.995493
747	20		80		0.995493
768	85		14		0.993533
771	14	85			0.993533
774	85	14			0.993533
787		83		16	0.994512
792		83		16	0.994512
814	20	80			0.995493
854		80		20	0.995493
858		80		20	0.995493
874		80	20		0.995493
880		60		40	1.0
885	80		20		0.995493
889	20	80			0.995493
894			25	75	0.996473
896			25	75	0.996473
943	75			25	0.996473
979		25		75	0.996473
1029	83		16		0.994512
1071	83		16		0.994512
1092	85	14			0.993533
1094			85	14	0.993533
1095	85	14			0.993533
1097	85			14	0.993533
1098	14		85		0.993533
1099	14			85	0.993533
1102		14		85	0.993533
1103	85			14	0.993533
1105			14	85	0.993533
1106		14	85		0.993533
1117		85		14	0.993533
1144	14		85		0.993533
1163	83			16	0.994512
1256	80		20		0.999996
1263	90		10		0.90298
1264	70		30		1.0
1270	90	10			0.90298
1288		83		16	0.994512
1289		16		83	0.994512
1295		83		16	0.994512
1302		83		16	0.994512
1303	66		33		1.0
1304	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain