SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6382

Length: 2186 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene6382
ATGGGGAGAGAGGATGCGTTAGGCTTTTAGGCAGCCATGAAGAGGTGTGAGGGATGCTTCGAGGTCGGCAGGTCGGAGGCCCTAGGCGACGACATTCTGCTGCAGGTTCTCGACAATATCAACGAAACCGAGACAGGAACTCATGGTCTCTTGTCTGCAAACAGTTCTATCGACTCGAATCGGTCTGCAAGAGGAAAATCCGGTTGCTCAGAGGCGAAATGCTGCCAAGAATTCTCAAGAGATACCGAGCTGTAGAGCACCTGGACTTGTCCCTCTGCCCTCAGATCAGCGATCAGTGCCTGGGGTTCGTGGCCGCAGCGGCTGGGCCTAGTCTGCGCTCCATAGATCTTTCGAGGCTCGTCCAGTTTAGTCACCTGGGGCTCTCCGTTCTGGCTAAGGGCTGCGAGAATCTGGTGGAGATTGATGTTTCTTACTGCGCGAGATTTGGGGATATGGAGGCTGCTGCCGTTTCCAATGCCAAGAATCTGCAGACCCTGAAATTAGTGAGGTGCCAGATGGTTTCTGACTTGGGTTTGAGCTTAATAGCCGTGGGGTGCAGGAAGCTCCAGGATTTGAATCTCAAATGGTGTGTGGGAGTTAGTGATTTGGGTGTTGAGCTCGTGGCTATAAAGTGCAAAGAATTGAGGTCTCTGGATGTTTCTTACTTACAGATAACAAACAAATGTATTGCATCCATCACACAACTTTCTTATCTAGAGACTTTTGTATCAGTTGGTTGTGTCTGTATAGATGACAAAGGCCTTACTTTGCTCAAGAATGGTTGCAAATCATTGCAGAGGCTTGATGTTTCGAAATGTCAGAGTATGAGTTCCACTGGTATAATTTCCCTTGCAAACGGATGTATAGCGTTGCAGCAACTAAACTTAGCCTATTGCATCCCTGTCACAAATGCTCTTCTTGCGAGCTTCGACAAATATGACAGCCTGCAATCCATACGATTTGATGGCTGTGAAATTTCTAGCTCAGGTTTGAAGTCTATTGGGAAAAGCTGCAAGTCTCTGATGGAATTGAGCTTAAGCAAGTGTACTGGAGTGACAGATGAAGGAATCTCTGCACTAGTGGGAGGCTGCACAGGGTTGAAAATTCTAGATATCACCTGTTGCCGTGATCTCACTGATGTTGCTATCACAGCTGTTGCAACATCTTGTGGAAATCTTTCATGTCTTAAGATGGAATCCTGTGCCCTGGTCACTGAGAGAAGCTTATATATGCTAGGAGATCGCTGCCCCTTTCTAGAAGTACTAGATCTCACCGATTGTAGTGTAAGCAATACAGGACTGAAATCCATTTCCAGGTGCACTGGATTGACTACCTTGAAACTAGGCCTATGCGAAAATATATCCAATGAGGGTATAACCCATATTGCTGCCCACTGTTCAAACCTCCAAGAGATTGATTTATACAGGTCTGTGGGAATTGGTGATACTGGATTAGCAGCACTTGCCAGTGGTTGTCCAAAGCTCAGAATGGTCAATCTCTCATATTGTATAGGTATCACAGATCATGGGCTGAAATCTCTGGCTCAACTAGAAAAACTTTACAACCTTGAGATTCGGGGTTGCTTCCTTGTAACATCTGCAGGGATTTCTGCCATTGCCTCGGGATGTAAGCGTCTGGTAGAGTTGGATATCAAGAGGTGCTACCGTGTTGATGATATGGGAATGATGACTGTAGTTCAATGTTGCTTAAACTTGAGACAGATAAATGTTTCATACTGTCCAATTTCAGATGCTGGCTTTTTGGCATTGGTGAATCTTAGTTGCTTGCAAAACGTGAATGTAGTGCATCTCAAAAATGTTTCTTTGGATGCCTTTGCATTTGTTTTGCTAGCTTGTGAGAGCCTAAAGAAAATCAAGCTTTTAAAACAATTAAAATCCTTGCTTTCATCCAATTTAATTAGACATGTAGAAAATAAAGGCTGCAGAATCCGATGGGTGGAGAAGCCTCTTTTTATTTAATCGTAGAAAATAGCTAAACTTTGATCCATGAAGACCTCTTAATCCATGGTGAGAGCATGAGGTCTAATAAGTTCGGAGCCGTGTATTCATCATCTCAAAATTGCAAAAGAATTTTCAAGTCATGGTTGTTTGAGCAGAAAATTTTTAAGGTAAGTTCTTGTCTATATGAAACTTTTTATTAGGATAATTAAGTTTCAATGCTAAAAC

Ace file of the UniGene sp_v1.1_unigene6382 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box protein, atfbl3, putative	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	protein	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A998

Fln msg: your sequence is longer than subject: 642 - 335

Fln protein: MLRGRQVGGPRRRHSAAGSRQYQRNRDRNSWSLVCKQFYRLESVCKRKIRLLRGEMLPRILKRYRAVEHLDLSLCPQISDQCLGFVAAAAGPSLRSIDLSRLVQFSHLGLSVLAKGCENLVEIDVSYCARFGDMEAAAVSNAKNLQTLKLVRCQMVSDLGLSLIAVGCRKLQDLNLKWCVGVSDLGVELVAIKCKELRSLDVSYLQITNKCIASITQLSYLETFVSVGCVCIDDKGLTLLKNGCKSLQRLDVSKCQSMSSTGIISLANGCIALQQLNLAYCIPVTNALLASFDKYDSLQSIRFDGCEISSSGLKSIGKSCKSLMELSLSKCTGVTDEGISALVGGCTGLKILDITCCRDLTDVAITAVATSCGNLSCLKMESCALVTERSLYMLGDRCPFLEVLDLTDCSVSNTGLKSISRCTGLTTLKLGLCENISNEGITHIAAHCSNLQEIDLYRSVGIGDTGLAALASGCPKLRMVNLSYCIGITDHGLKSLAQLEKLYNLEIRGCFLVTSAGISAIASGCKRLVELDIKRCYRVDDMGMMTVVQCCLNLRQINVSYCPISDAGFLALVNLSCLQNVNVVHLKNVSLDAFAFVLLACESLKKIKLLKQLKSLLSSNLIRHVENKGCRIRWVEKPLFI*

Protein Length: 643

Fln nts: ATGGGGAGAGAGGATGCGTTAGGCTTTTAGGCAGCCATGAAGAGGTGTGAGGG_-_ATGCTTCGAGGTCGGCAGGTCGGAGGCCCTAGGCGACGACATTCTGCTGCAGGTTCTCGACAATATCAACGAAACCGAGACAGGAACTCATGGTCTCTTGTCTGCAAACAGTTCTATCGACTCGAATCGGTCTGCAAGAGGAAAATCCGGTTGCTCAGAGGCGAAATGCTGCCAAGAATTCTCAAGAGATACCGAGCTGTAGAGCACCTGGACTTGTCCCTCTGCCCTCAGATCAGCGATCAGTGCCTGGGGTTCGTGGCCGCAGCGGCTGGGCCTAGTCTGCGCTCCATAGATCTTTCGAGGCTCGTCCAGTTTAGTCACCTGGGGCTCTCCGTTCTGGCTAAGGGCTGCGAGAATCTGGTGGAGATTGATGTTTCTTACTGCGCGAGATTTGGGGATATGGAGGCTGCTGCCGTTTCCAATGCCAAGAATCTGCAGACCCTGAAATTAGTGAGGTGCCAGATGGTTTCTGACTTGGGTTTGAGCTTAATAGCCGTGGGGTGCAGGAAGCTCCAGGATTTGAATCTCAAATGGTGTGTGGGAGTTAGTGATTTGGGTGTTGAGCTCGTGGCTATAAAGTGCAAAGAATTGAGGTCTCTGGATGTTTCTTACTTACAGATAACAAACAAATGTATTGCATCCATCACACAACTTTCTTATCTAGAGACTTTTGTATCAGTTGGTTGTGTCTGTATAGATGACAAAGGCCTTACTTTGCTCAAGAATGGTTGCAAATCATTGCAGAGGCTTGATGTTTCGAAATGTCAGAGTATGAGTTCCACTGGTATAATTTCCCTTGCAAACGGATGTATAGCGTTGCAGCAACTAAACTTAGCCTATTGCATCCCTGTCACAAATGCTCTTCTTGCGAGCTTCGACAAATATGACAGCCTGCAATCCATACGATTTGATGGCTGTGAAATTTCTAGCTCAGGTTTGAAGTCTATTGGGAAAAGCTGCAAGTCTCTGATGGAATTGAGCTTAAGCAAGTGTACTGGAGTGACAGATGAAGGAATCTCTGCACTAGTGGGAGGCTGCACAGGGTTGAAAATTCTAGATATCACCTGTTGCCGTGATCTCACTGATGTTGCTATCACAGCTGTTGCAACATCTTGTGGAAATCTTTCATGTCTTAAGATGGAATCCTGTGCCCTGGTCACTGAGAGAAGCTTATATATGCTAGGAGATCGCTGCCCCTTTCTAGAAGTACTAGATCTCACCGATTGTAGTGTAAGCAATACAGGACTGAAATCCATTTCCAGGTGCACTGGATTGACTACCTTGAAACTAGGCCTATGCGAAAATATATCCAATGAGGGTATAACCCATATTGCTGCCCACTGTTCAAACCTCCAAGAGATTGATTTATACAGGTCTGTGGGAATTGGTGATACTGGATTAGCAGCACTTGCCAGTGGTTGTCCAAAGCTCAGAATGGTCAATCTCTCATATTGTATAGGTATCACAGATCATGGGCTGAAATCTCTGGCTCAACTAGAAAAACTTTACAACCTTGAGATTCGGGGTTGCTTCCTTGTAACATCTGCAGGGATTTCTGCCATTGCCTCGGGATGTAAGCGTCTGGTAGAGTTGGATATCAAGAGGTGCTACCGTGTTGATGATATGGGAATGATGACTGTAGTTCAATGTTGCTTAAACTTGAGACAGATAAATGTTTCATACTGTCCAATTTCAGATGCTGGCTTTTTGGCATTGGTGAATCTTAGTTGCTTGCAAAACGTGAATGTAGTGCATCTCAAAAATGTTTCTTTGGATGCCTTTGCATTTGTTTTGCTAGCTTGTGAGAGCCTAAAGAAAATCAAGCTTTTAAAACAATTAAAATCCTTGCTTTCATCCAATTTAATTAGACATGTAGAAAATAAAGGCTGCAGAATCCGATGGGTGGAGAAGCCTCTTTTTATTTAA___TCGTAGAAAATAGCTAAACTTTGATCCATGAAGACCTCTTAATCCATGGTGAGAGCATGAGGTCTAATAAGTTCGGAGCCGTGTATTCATCATCTCAAAATTGCAAAAGAATTTTCAAGTCATGGTTGTTTGAGCAGAAAATTTTTAAGGTAAGTTCTTGTCTATATGAAACTTTTTATTAGGATAATTAAGTTTCAATGCTAAAAC

Fln Alignment:

sp_v1.1_unigene6382___LDLSLCPQISDQCLGFVAAAAGPSLRSIDLSRLVQFSHLGLSVLAKGCENLVEIDVSYCARFGDMEAAAVSNAKNLQTLKLVRCQMVSDLGLSLIAVGCRKLQDLNLKWCVGVSDLGVELVAIKCKELRSLDVSYLQITNKCIASITQLSYLETFVSVGCVCIDDKGLTLLKNGCKSLQRL
D5A998______________LNLGFCLNISAEGIYHIGACCS-NLQELNLYRSVGTGDAGLEAIANGCPRLKSINISYCINVTDNSMKSISRLQKLHNLEIRGCPGISSAGLSAIALGCKRIVALDVKGCYNIDDAGILAIADSCQNLRQINVSYCPISDVGLSTLARLSCLQNMKLVHLKNVTVNGFASALLDCESLKKL

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
358	33	66			0.997452
387		25	75		0.996473
532		81		18	0.999994
629	90			10	0.90298
631	10			90	0.90298
632			10	90	0.90298
634			10	90	0.90298
635	10			90	0.90298
704	90		10		0.90298
732		88		11	0.923564
764		14		85	0.993533
765	85	14			0.993533
766		14		85	0.993533
768	85			14	0.993533
816		80		20	0.995493
823		20	80		0.995493
824		20	80		0.995493
1475	75		25		0.996473
1504	66	33			0.997452
1581	33	66			0.997452
1750		20		80	0.995493
1798		83		16	0.994512
1916		33	66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain