SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6373

Length: 1958 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6373
CGTCGTGACCTTGGCTGTCACTCAATTGCCCCTTATTTTCCAGAATTTGCAGGTACTGAAAAAATTCATTTAGACTGAGCAAATCAAGTAGTCGGCAGGCCTTTAGGCGAAAAATATCTTCGCCGAGATCATACGGCGGTGCACGTTAGGTGGAGAGTCTCGACATAACAACTCAACCTGTGTGCTCGAAGACTTTAAATAAAAAACCTGTGTGCCAGAAGACTTCGATAAAATCCTTGATCGCCAAATTAGAGAACAGAGTGTAAATTTGCGGAATAAGGTTTCGAGTTTCATATGTTGCTCTTCCTTTCTTCAAGGCGATAATATCTCAGGACAATTTCTTATCTCGCTCCTGCCCATTTTAAGTACACAGATTGGTGGCTTTCCAGGCTTTTTATTGTATTTCTATTTTATTCTCTGTTAGGAAGCATTTTCCCTGTAATCTAGGTTCTGAACTGATTCAGCAATGAGTCGCCCGCATGAAGGGTATTCTGTGCTCCAGTACTTTGGAAATCCTTTCAAAAAGGTTTCTTCTCAACGCTCGTCTGAAAAGTCTTCAAAGCTTAATAACATATGCAACGCGTTTGAGATTTCTTTGACAGAAAGGTTAAAGAAACTGCAGGCAAAGATTCCAAAGGACATGATAGATCTGTCTTGGATCCAGCTAGCCATCGAGGTTTTGTCTGCTACACACGCGGATTTCAAGTCCCTAATTGCGAATCTCCGATTCCCTGCAACGGAATGGAATGATAAATGGAAGGACGAATACCTGGATGACACTGTAAAGCTCTTGGACATTTGTATTGCATTGAATGCTGAAATCTCAAAGCGCGAGCATTTCCAGCTTCTTGTTCACTATGCTTTGCATTTACTGGACTTTTCAGGAGGCGTTTGGTCTAGTGACAAGCTATTCCGTGCCAAAGATTCTTTAAAAGAATTGACGGAGAAAACAGATCTGAAGAGGAAAAGTTGCTTAAATTCACAAAGAAACGGTAAGATTGAGAATTGCAGTGTGATATTACAGGGCATGAACAATAGCCTTCAGTATGGGAAAGGAAAATCTTCGGCAAGAGATAGGGTTTTTTTGAGAGCCATCTATGCGCTGAAGGCAACAACCATATTTATGTGCAGTGTCGTGGTATCTGCTCTCGCGGGGCATCCTGGCCTATTGATCGAATTGAGAGTCCCTGATCATTTACTGTGGTCCGCAGCATTTAGGAGTTTGCAGGTGGAGATTAATGATAAAATCAAGAGATGTTTCACTGAGGGCCGTGTTGGGGTTGTGAAAGAAATAGAAACGTTGGATGCAGCCATTGCAAAGGTGCATTCTACAATCGAGAAAGTGGATGTTGACATTGTTGAGGGTACAGAGAAAGTGGAAGAGATCATAATCGATGTACAGGAATTAAAGCGTTGTGTGGAATTGGTTGGCCAAGGGTTAGCTCCTCTGACTAAACAGGTGAATGACTTCTTTCAGGTTGTTTTGAGTGGAAGGAACGCATTGCTTGATAGTCTCAGATTGTCAGAGATAGTCAGTCATGAATGAAGGAATGAGTAAGTCGAGCAGGATCAAATGTTTCCTCTACGGATTGCTGGACAAAACTCCATAATGTACAGGGATTAAATCTGCCCCTAATTGACAGATTGTTTGTTTCACTTTGTAATTGTATTGCTGTATCTGCATGATTTTTATATTTGATTTTTACAGAAAGCATAAGACAGTTTATTAGAAAGGCAGTTATAGATATGAAATTTGTAACGTGATTGGATTTACTTTTAACGTACCTATATGGAAGCGGTGGCTGAGTGGGCATGTCATTTGCAAAATTCCACATACGCAAGAATCCAGGTACAATCTAGGCGTTCTTTGGTGTCAAATAGTGTGTATCAATAAAATTTTAATTATTATGGTTGTGAAGCTTGTTAATTTCAATGTATCCATTGATGATTTAATGGTA

Ace file of the UniGene sp_v1.1_unigene6373

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BPS1; BPS1 (BYPASS 1)	-	-	7.00649e-45	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	uncharacterized protein	-	-	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein BYPASS-related	IPR008511	-	0.0	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVE1

Fln msg:

Fln protein: MSRPHEGYSVLQYFGNPFKKVSSQRSSEKSSKLNNICNAFEISLTERLKKLQAKIPKDMIDLSWIQLAIEVLSATHADFKSLIANLRFPATEWNDKWKDEYLDDTVKLLDICIALNAEISKREHFQLLVHYALHLLDFSGGVWSSDKLFRAKDSLKELTEKTDLKRKSCLNSQRNGKIENCSVILQGMNNSLQYGKGKSSARDRVFLRAIYALKATTIFMCSVVVSALAGHPGLLIELRVPDHLLWSAAFRSLQVEINDKIKRCFTEGRVGVVKEIETLDAAIAKVHSTIEKVDVDIVEGTEKVEEIIIDVQELKRCVELVGQGLAPLTKQVNDFFQVVLSGRNALLDSLRLSEIVSHE*

Protein Length: 361

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGCCCCTTATTTTCCAGAATTTGCAGGTACTGAAAAAATTCATTTAGACTGAGCAAATCAAGTAGTCGGCAGGCCTTTAGGCGAAAAATATCTTCGCCGAGATCATACGGCGGTGCACGTTAGGTGGAGAGTCTCGACATAACAACTCAACCTGTGTGCTCGAAGACTTTAAATAAAAAACCTGTGTGCCAGAAGACTTCGATAAAATCCTTGATCGCCAAATTAGAGAACAGAGTGTAAATTTGCGGAATAAGGTTTCGAGTTTCATATGTTGCTCTTCCTTTCTTCAAGGCGATAATATCTCAGGACAATTTCTTATCTCGCTCCTGCCCATTTTAAGTACACAGATTGGTGGCTTTCCAGGCTTTTTATTGTATTTCTATTTTATTCTCTGTTAGGAAGCATTTTCCCTGTAATCTAGGTTCTGAACTGATTCAGCA_-_ATGAGTCGCCCGCATGAAGGGTATTCTGTGCTCCAGTACTTTGGAAATCCTTTCAAAAAGGTTTCTTCTCAACGCTCGTCTGAAAAGTCTTCAAAGCTTAATAACATATGCAACGCGTTTGAGATTTCTTTGACAGAAAGGTTAAAGAAACTGCAGGCAAAGATTCCAAAGGACATGATAGATCTGTCTTGGATCCAGCTAGCCATCGAGGTTTTGTCTGCTACACACGCGGATTTCAAGTCCCTAATTGCGAATCTCCGATTCCCTGCAACGGAATGGAATGATAAATGGAAGGACGAATACCTGGATGACACTGTAAAGCTCTTGGACATTTGTATTGCATTGAATGCTGAAATCTCAAAGCGCGAGCATTTCCAGCTTCTTGTTCACTATGCTTTGCATTTACTGGACTTTTCAGGAGGCGTTTGGTCTAGTGACAAGCTATTCCGTGCCAAAGATTCTTTAAAAGAATTGACGGAGAAAACAGATCTGAAGAGGAAAAGTTGCTTAAATTCACAAAGAAACGGTAAGATTGAGAATTGCAGTGTGATATTACAGGGCATGAACAATAGCCTTCAGTATGGGAAAGGAAAATCTTCGGCAAGAGATAGGGTTTTTTTGAGAGCCATCTATGCGCTGAAGGCAACAACCATATTTATGTGCAGTGTCGTGGTATCTGCTCTCGCGGGGCATCCTGGCCTATTGATCGAATTGAGAGTCCCTGATCATTTACTGTGGTCCGCAGCATTTAGGAGTTTGCAGGTGGAGATTAATGATAAAATCAAGAGATGTTTCACTGAGGGCCGTGTTGGGGTTGTGAAAGAAATAGAAACGTTGGATGCAGCCATTGCAAAGGTGCATTCTACAATCGAGAAAGTGGATGTTGACATTGTTGAGGGTACAGAGAAAGTGGAAGAGATCATAATCGATGTACAGGAATTAAAGCGTTGTGTGGAATTGGTTGGCCAAGGGTTAGCTCCTCTGACTAAACAGGTGAATGACTTCTTTCAGGTTGTTTTGAGTGGAAGGAACGCATTGCTTGATAGTCTCAGATTGTCAGAGATAGTCAGTCATGAATGA___AGGAATGAGTAAGTCGAGCAGGATCAAATGTTTCCTCTACGGATTGCTGGACAAAACTCCATAATGTACAGGGATTAAATCTGCCCCTAATTGACAGATTGTTTGTTTCACTTTGTAATTGTATTGCTGTATCTGCATGATTTTTATATTTGATTTTTACAGAAAGCATAAGACAGTTTATTAGAAAGGCAGTTATAGATATGAAATTTGTAACGTGATTGGATTTACTTTTAACGTACCTATATGGAAGCGGTGGCTGAGTGGGCATGTCATTTGCAAAATTCCACATACGCAAGAATCCAGGTACAATCTAGGCGTTCTTTGGTGTCAAATAGTGTGTATCAATAAAATTTTAATTATTATGGTTGTGAAGCTTGTTAATTTCAATGTATCCATTGATGATTTAATGGTA

Fln Alignment:

sp_v1.1_unigene6373___MSRPHEGYSVLQYFGNPFXXXXXXXXXXXXXXLNNICNAFEISLTERLKKLQAKIPKDMIDLSWIQLAIEVLSATHADFKSLIANLRFPATEWNDKWKDEYLDDTVKLLDICIALNAEISKREHFQLLVHYALHLLDFSGGVWSSDKLFRAKDSLKELTEKTDLKRKSCLNSQRNGKIENCSVILQGMNNSLQYGKGKSSARDRVFLRAIYALKATTIFMCSVVVSALAGHPGLLIELRVPDHLLWSAAFRSLQVEINDKIKRCFTEGRVGVVKEIETLDAAIAKVHSTIEKVDVDIVEGTEKVEEIIIDVQELKRCVELVGQGLAPLTKQVNDFFQVVLSGRNALLDSLRLSEIVSHE
A9NVE1______________MNRPHEGHSVFQYLGNPFKRVSFQRSSEKSSKLNHIWNAFEISLTERLKRLEAKIPKDMIDLSWMQQAIEFLSATHADFKSLIANLRFPATEWNEKWKDEYLDDTVKLLDICIALNAEISKREHFQLLVHYVLHLLDFSGGNWSNDKLFRAKDCLKELMEKTDLNRKTCLNSQRNGKIENCSVILQGMSNSLQFGKGKSSARDRVFLRAVYALKATTIFVCSVAVSALAGHPGLLIELKIPDHLLWSAAFMSLQEEINDEIKKCFTEGRVGVVKEIETLDAAIENVHSTVEKVAVDMVEGTEKVEEIRIAVQELKQSVELVGQGLAPLTKQVNNFFQVVLSGRNALLDSLRLSEIVSHE

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
34		25		75	0.996473
38			25	75	0.996473
42		75		25	0.996473
57		25		75	0.996473
75	75			25	0.996473
90	25			75	0.996473
200	75		25		0.996473
315			20	80	0.995493
318	80		20		0.995493
319	80			20	0.995493
321	20		80		0.995493
324	80	20			0.995493
326	80			20	0.995493
327	80		20		0.995493
328			20	80	0.995493
329	80	20			0.995493
331		80	20		0.995493
336		20	80		0.995493
337	80			20	0.995493
368	83	16			0.994512
374		83	16		0.994512
375	83			16	0.994512
379		16		83	0.994512
380		16	83		0.994512
381			83	16	0.994512
386		16		83	0.994512
387			16	83	0.994512
392		16	83		0.994512
393			83	16	0.994512
394		16		16	0.988813
395	16	83			0.994512
1170		90	10		0.90298
1172	90	10			0.90298
1173			10	90	0.90298
1181	90	10			0.90298
1185	90		10		0.90298
1186		10	90		0.90298
1303		90		10	0.90298
1305			10	90	0.90298
1306			10	90	0.90298
1360			16	83	0.999991
1529	92		7		0.999532

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain