SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6351

Length: 1528 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene6351 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PWWP domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L3U3_ARALY	-	-	1.96182e-44	50%
FL-Next	sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	27%
Blast2go	pwwp domain-containing protein	-	-	2.8026e-45	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	PWWP	IPR000313	-	2.8026e-45	63%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9M3G7

Fln msg: Distance to subject end: 3506 aas, your sequence is shorter than subject: 357 - 3856

Fln protein: MNFLHNKKPSRARAEEIRTHGQKKKIHNAPGHRVIKGVATATTLEEDAEEDALPIGRVLMRKTDKPLKRKAVSNNETENATEEGKCDKLSLPASGNCRVWKQKRKFQEGDMVWGKVKSHPWWPGQIYNPAFATSMAKRSRRSGHVLVAFFGDATFGWFTESNLVPFEPTFAHKSKQTMSRSFCDAVDDAIDELGRRAALGLMCGCTNSFSSTAREGHIEVTVPGYEAPVIYMDRQVKEAKEGFQPAQMLAFMQRMAVAPRCGEDRMILGIKYAAQVRAYRAATAVPVTAEYRQALRLSQRSCLQDVADSEAVSDPHVVFADKGEVHSRFLPFFGNMFYWLSMSVSSRISFHRIIPLY

Protein Length: 358

Fln nts: GATCTGGTGTGCTAGAAATCGCGTTCGCATTGATACCATCTTAGTCTTAACTAAAAGCGGCCCACTACCGGAGCTCCCTCATAAATACCGTCGTGACCTTGGCTGTCGCTCTACTTTTTTTCCCATGAGCGGCAGGCTGTGGAATCCCGTCACTAGGCCCTGGAGTGGGGGCTTACTGCAGTGAAAACGTCAACCCATTCATCCACAGAGAAAACAAACCTAAATAAGACGAGAAGCATCGGGAGAAGAGCAGGGAGTGATTGAGTTATCTCCATTTGAGAATTTTGCAGTCTAGTCCAGATGATCGTATCTCAGCTCACTGTCGAACAAATTCACGCAAATGCAAAGGTATGGGTTTAATTCCATCCCACTGCGCGCATTATTTCTTTAAACAATTGATAAACCCTCGCATCCTATTATTATTATTATTATTGTGTGTGGCAACGAGCAGCAGCC_-_ATGAATTTCCTCCACAATAAGAAACCTTCCCGTGCAAGGGCTGAAGAGATTCGAACCCATGGCCAGAAGAAGAAAATTCATAATGCACCGGGCCATAGGGTAATAAAAGGTGTTGCCACCGCCACCACCTTGGAGGAGGATGCAGAGGAGGACGCCCTTCCCATTGGGAGGGTTTTGATGAGGAAAACGGACAAACCCTTGAAGCGAAAGGCTGTAAGTAATAATGAAACAGAGAACGCGACAGAGGAGGGCAAATGCGATAAATTATCGTTACCAGCGTCTGGCAATTGTAGGGTTTGGAAGCAAAAGAGGAAGTTTCAAGAGGGGGATATGGTTTGGGGTAAGGTGAAGTCCCATCCATGGTGGCCAGGGCAAATATACAACCCTGCTTTTGCCACCTCCATGGCCAAAAGGTCCCGCAGGAGCGGCCATGTTCTGGTGGCCTTCTTTGGGGATGCAACCTTTGGTTGGTTCACAGAATCAAATTTGGTACCCTTTGAGCCCACTTTTGCCCATAAATCAAAGCAAACGATGTCTAGGAGCTTCTGCGATGCTGTCGACGATGCCATCGACGAGTTGGGTAGGCGTGCTGCGTTGGGTTTGATGTGTGGTTGCACAAATTCCTTCAGTTCTACAGCAAGGGAGGGGCATATTGAGGTAACTGTGCCCGGTTATGAAGCTCCAGTGATATATATGGATAGGCAGGTCAAGGAGGCCAAGGAGGGGTTTCAGCCAGCGCAGATGCTTGCTTTTATGCAAAGGATGGCTGTGGCTCCTAGGTGTGGGGAGGACAGGATGATATTAGGGATCAAGTATGCAGCCCAAGTCCGAGCATACCGAGCTGCTACCGCTGTTCCTGTGACTGCTGAGTATCGACAAGCCTTGAGGCTTTCACAAAGAAGCTGTTTGCAAGATGTTGCTGATTCCGAGGCTGTTTCGGATCCACATGTGGTCTTCGCAGACAAAGGTGAGGTGCACAGCAGGTTTTTGCCCTTTTTTGGGAACATGTTTTACTGGTTGTCTATGAGCGTCTCCTCAAGGATTTCATTCCATAGGATTATCCCCTTGTATC

Fln Alignment:

sp_v1.1_unigene6351___QKRKFQEGDMVWGKVKSHPWWPGQI--YNPAFATSMAKRSRRSGHVLVAFFGDATFGWFTESNLVPFEPTFAHKSKQTMSRSFCDAVDDAIDELGRRAALGLMCGC
Q9M3G7______________ETQEFLVGNLVWVMTKYKKWWPGEVVDFKADAKESFMVRSIGQSHLV---------SWFASSKLKPFKESFEQVLNQRNDNGFFDALQKAMSLLSNSLKLDMTCSC

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
462	87		12		0.992554
468		87	12		0.992554
469	87		12		0.992554
473	87		12		0.992554
476		87	12		0.992554
492	50		50		1.0
599		12		87	0.992554
600		12	87		0.992554
601	87	12			0.992554
603		87		12	0.992554
740		75		25	0.996473
741		75	25		0.996473
745		20		80	0.995493
746	20	80			0.995493
747		80	20		0.995493
750	20			80	0.995493
751	20			80	0.995493
752		80	20		0.995493
753			20	80	0.995493
755		20	80		0.995493
757	80		20		0.995493
760			20	80	0.995493
830	12	87			0.992554
901	80		20		0.995493
997	75		25		0.996473
1029		20		80	0.995493
1030		20		80	0.995493
1035		80		20	0.995493
1063		25	75		0.996473
1280		20	80		0.995493
1282		20		80	0.995493
1284	20			80	0.995493
1419	50			50	1.0
1421	50	25	25		0.995533
1422		25	75		0.996473
1423		50		50	1.0
1424	25		50	25	0.995533
1425	75			25	0.996473
1426		66		33	0.997452
1427	66			33	0.997452
1429		66		33	0.997452
1430		66	33		0.997452
1432	66	33			0.997452
1437	66			33	0.997452
1438		66	33		0.997452
1440	66			33	0.997452
1441		66	33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1096	1114	AAT AAT AAT AAT AAT AAT A	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain