SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6341

Length: 776 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene6341 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RBX1-like protein n=5 Tax=Spermatophyta RepID=A0ELV2_PETIN	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	ring-box protein	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	Cul3-RING ubiquitin ligase complex	GO:0031463	Cellular Component	92%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	92%

Full-Lengther Next Prediction

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
269	90	10			0.90298
271			90	10	0.90298
290		11	88		0.923564
291	88	11			0.923564
292	88	11			0.923564
333		12		87	0.992554
335	10			90	0.90298
368		88	11		0.923564
369		11		88	0.923564
373			11	88	0.923564
374	88			11	0.923564
379		11	88		0.923564
382	25	75			1.0
387	75	25			1.0
388		25		75	1.0
389	25		75		1.0
390	28			71	1.0
394		25		75	1.0
395	25			75	1.0
397			25	75	1.0
398	22		77		0.999999
400	77		22		0.999999
406	14	85			0.993533
407	85		14		0.993533
408		85		14	0.993533
409	87		12		0.992554
411		12		87	0.992554
412	12			87	0.992554
414		14		85	0.993533
418		88	11		0.923564
419		88	11		0.923564
420	88			11	0.923564
423	88	11			0.923564
424			11	88	0.923564
428		88	11		0.923564
582		2		90	0.999998
722		3	96		0.986325
743	73	16	2		1.0
744	83	16			1.0
745	88	11			1.0
746	92	4		2	0.987114
747	90			10	1.0
748		93		6	0.99903
757	90		9		1.0
769		12	87		0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain