SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6332

Length: 1344 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene6332 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	copia-type polyprotein	-	-	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Integrase, catalytic core	IPR001584	-	0.0	56%
Blast2go	Ribonuclease H-like domain	IPR012337	-	0.0	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: your sequence is shorter than subject: 349 - 407

Fln protein: WGGCSYYMTFTDDFSRKTWIYFLKKDEAFMWFRTFKALVENMTGKKIKILRTDNGTEYESNEFKDFCREAGIKRETTTAYTPEQNGVAERKNRTIVEAARAMLCDQGLPKFMWGEAANTAVYIQNRCPHSALDSKTPEEVFSGKKPDVSHFRIFGCPVYFHVPKEKRSKLDATGKKGMFVGYSEISKAYRVYVPGQREVEISHDVTFDEDASLKKVVDLPRSEENHEERPGNLEEPQDETMPDVEGPMDPIDPSPSLGKRPSWLRDTLEDAEGHAAPRGTFRESKKPCRYQGYLAAMSTIIQSEPGSFEEAIKHQVWKDAMHEEYEAIMKNDVWDVVPRPKDKICCHR*

Protein Length: 350

Fln nts: ATGGGGGGGATGTTCTTACTATATGACATTTACTGATGACTTCTCTCGCAAAACCTGGATATACTTCTTGAAGAAGGATGAGGCTTTCATGTGGTTCCGTACCTTTAAAGCCTTGGTGGAAAATATGACCGGAAAGAAGATCAAGATTTTGAGGACTGACAATGGCACTGAATATGAGTCAAATGAGTTCAAAGACTTTTGCAGAGAAGCTGGCATTAAGAGGGAGACTACCACTGCATATACTCCTGAGCAGAATGGTGTTGCTGAACGCAAGAATAGGACTATTGTGGAAGCTGCCCGTGCCATGCTATGTGACCAAGGTCTTCCAAAGTTTATGTGGGGAGAAGCTGCAAATACTGCTGTGTACATTCAAAACCGATGCCCTCATTCCGCTTTGGACTCCAAAACTCCCGAAGAGGTTTTCTCTGGTAAGAAACCTGATGTCTCACATTTTAGAATTTTTGGATGTCCTGTCTATTTTCATGTGCCGAAAGAAAAGAGAAGTAAGCTGGATGCTACTGGGAAGAAAGGAATGTTTGTGGGCTACAGTGAGATTTCTAAGGCATATAGAGTCTATGTACCTGGTCAAAGGGAAGTAGAGATAAGCCATGATGTCACTTTTGACGAAGATGCTTCCCTGAAGAAAGTAGTAGATCTTCCTAGATCTGAAGAAAACCATGAAGAAAGACCTGGAAATCTGGAAGAACCCCAGGATGAGACTATGCCTGATGTTGAAGGGCCAATGGACCCTATTGATCCTTCCCCTTCTCTAGGAAAGAGGCCATCATGGCTCAGGGACACCCTCGAAGATGCTGAGGGTCATGCTGCCCCAAGGGGAACATTCCGAGAAAGCAAGAAGCCGTGTAGATACCAAGGGTATCTAGCTGCCATGAGTACTATTATACAATCTGAACCTGGATCTTTTGAGGAAGCCATCAAGCATCAGGTTTGGAAGGATGCTATGCATGAAGAATATGAGGCTATTATGAAGAATGATGTCTGGGATGTGGTCCCGAGACCGAAGGACAAAATCTGTTGTCACCGCTAA___ATGGCTCTACAAGATTAAACATGGATCTGATGGGAGTGCTGAAAAGTTTAAGGCAAGATTTGTTGCCCGTGGCTGTCTCTCAAAAGGAAGGAATTGACTATGACGATATATTTGCACCTGTGGCTCGATATACCACCATCCGATCCATCATAGCCCTTGCTGCTACGCAAGGATGGAGTCTTCATCAGATGGATGTCAAGACCGCTTTTCTGCATGGTGCAATAAAGGAGAGGTGTATGTAGAACAACCTCTGGGATTTGAAGTTCAAGATCGAGACACTTATGTCTGCAAGTTGA

Fln Alignment:

sp_v1.1_unigene6332___GCSYYMTFTDDFSRKTWIYFLK-KDEAFMWFRTFKALVENMTGKKIKILRTDNGTEYESNEFKDFCREAGIKRETTTAYTPEQNGVAERKNRTIVEAARAMLCDQGLPKFMWGEAANTAVYIQNRCPHSALDSKTPEEVFSGKKPDVSHFRIFGCPVYFHVPKEKRSKLDATGKKGMFVGYSEISKAYRVYVPGQREVEISHDVTFDE
B8LKX7______________GSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDE

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
219	66			33	1.0
228	33	66			1.0
231			66	33	1.0
234	66	33			1.0
235		66	33		1.0
236	83	16			0.994512
237	50	50			1.0
238		16	33		1.0
269		33		66	0.997452
275		66		33	0.997452
771	80		20		0.995493
773	80		20		0.995493
783		75		25	0.996473
803		66		33	0.997452
824		66	33		0.997452
825		66		33	0.997452
826	66	33			0.997452
829	66		33		0.997452
830	33		66		0.997452
832	66	33			0.997452
835		66		33	0.997452
836	66		33		0.997452
840			33	66	0.997452
841	66			33	0.997452
844	33			66	0.997452
962	33		66		0.997452
970	33		66		0.997452
975		33	66		0.997452
1011			50	50	1.0
1031		25		75	0.996473
1052	25		75		0.996473
1118	25		75		0.996473
1140		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain