SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6330

Length: 1657 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6330

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sodium/hydrogen exchanger n=1 Tax=Picea sitchensis RepID=A9NW71_PICSI	-	-	90%
FL-Next	sp=Sodium/hydrogen exchanger; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	na+ h+ antiporter	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	lithium ion transport	GO:0010351	Biological Process	84%
Blast2go	sodium ion transport	GO:0006814	Biological Process	84%
Blast2go	sodium ion transmembrane transporter activity	GO:0015081	Molecular Function	84%

Source	InterPros	Term	Type	Identity
Blast2go	Na+/H+ exchanger	IPR004709	-	84%
Blast2go	Cation/H+ exchanger	IPR006153	-	84%
Blast2go	Cation/H+ exchanger, CPA1 family	IPR018422	-	84%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW71

Fln msg: Distance to subject end: 134 aas, your sequence is shorter than subject: 460 - 594

Fln protein: MAELPLSPSDSPGKAAIETQAAGVGILLQIMMLVLAFVLGHVLRRHKFYYLHEASASLLIGLIVGGLANISNTEENIRKWFNFHEEFFFLLLLPPIIFQSGFSLQPKPFFSNFGAIITFAILGTFISSMVTGILVYLGGIFLLMFRLPFQECMMFGALISATDPVTILAIFQELGCDTNLYALVFGESVLNDAVAISLYRTMLSVRQHAATNQSMLTAVWRFIETFFGSMSTGAAVALSSALLFKYAGLGIDNLQNLECCLFVLFPYLSYMLAEGLGLSGIVAILFCGIVMKHYTFSNLSEKSQTFTAGFFELISSLAETFVFIYMGLDIATEQQSWSHVGFIFFSILFIGVARAANVFPCAYFINFVRPESRKIPMKHQKALWYSGLRGAMAFALALQSIHELPDGHGEIIFTATTAIVVLTVLLIGGSTATMLEALEVTGDSQVVLFGESSDEESDYR

Protein Length: 461

Fln nts: CGTCGTGACCTTGGCTGTCAATGGGGCTACGCCTCTACGCTAATGGTGGAGGAAGTATTCTGTAGAGAGAATACTGGAGGAAGAAGTGCTCCGTTGAGAGAATCCGAGGTTTCGGTCGTTCTGAGCCGACACAATAGTAGCAGTAGTATTCGAAAACCCTCAGCGTTGCAGAGGATTTTGTTGTAGCGCTGCTGCCCAATCTTTATCAATTCAATTCAATCTTTATCTTTTGAATTTGGATTGGGGGGAGTAGATTTTTTGAAGAAATTGGCGGCG_-_ATGGCCGAACTGCCGCTTTCTCCTTCTGATTCTCCAGGGAAGGCGGCCATCGAAACGCAGGCTGCAGGCGTGGGAATACTCCTCCAGATCATGATGCTTGTGCTTGCATTTGTGCTTGGCCATGTCTTGCGCAGGCACAAATTCTACTATCTGCACGAGGCCAGCGCCTCTCTTTTGATTGGTCTGATTGTTGGTGGGTTGGCAAACATTTCAAATACAGAAGAGAACATTAGGAAATGGTTCAATTTCCACGAGGAGTTTTTCTTTTTGCTTCTGCTGCCACCAATAATCTTTCAGTCAGGTTTTAGCTTACAACCTAAACCATTCTTTTCAAACTTTGGTGCAATAATCACATTTGCTATTTTGGGGACATTCATCTCTTCAATGGTGACGGGAATTTTAGTTTATCTAGGAGGGATATTCCTTCTGATGTTTAGGCTACCATTTCAAGAGTGCATGATGTTTGGTGCTCTTATCTCAGCTACAGACCCAGTGACAATATTAGCCATCTTTCAGGAACTAGGTTGTGATACTAACCTTTACGCTTTGGTCTTTGGAGAGTCAGTTCTAAATGATGCGGTGGCGATATCTCTCTACAGGACGATGTTATCAGTCCGTCAGCATGCAGCAACCAACCAGAGCATGTTAACTGCAGTGTGGAGGTTTATTGAAACTTTCTTTGGTTCCATGTCTACAGGTGCTGCTGTGGCGTTGAGTTCTGCTTTACTGTTCAAGTATGCGGGACTTGGTATTGACAATCTTCAGAACTTGGAGTGCTGCCTGTTTGTGCTCTTTCCATATTTGTCATACATGTTAGCTGAGGGCCTTGGTCTCTCTGGGATTGTTGCAATACTGTTCTGTGGAATTGTGATGAAGCATTACACTTTTTCAAATTTGTCAGAAAAATCTCAGACTTTTACAGCTGGATTTTTTGAATTAATTTCATCTTTGGCAGAAACATTTGTGTTTATTTATATGGGATTGGATATTGCCACTGAACAGCAGAGTTGGTCACATGTTGGATTCATATTTTTTTCGATTCTCTTCATTGGTGTTGCAAGGGCGGCAAATGTGTTCCCTTGCGCTTACTTTATCAACTTTGTCCGGCCAGAAAGTAGAAAAATACCAATGAAACATCAGAAAGCCCTTTGGTATAGCGGGCTGAGGGGGGCTATGGCATTTGCTCTTGCACTACAGTCGATCCATGAACTACCGGATGGTCATGGCGAGATTATCTTCACAGCTACTACTGCTATTGTTGTTTTGACGGTCCTACTGATTGGAGGGTCAACAGCAACAATGCTTGAAGCTTTGGAGGTTACTGGTGATAGCCAAGTGGTCCTTTTTGGAGAGAGTTCAGACGAAGAAAGTGATTATAGAG

Fln Alignment:

sp_v1.1_unigene6330___MAELPLSPSDSPGKAAIETQAAGVGILLQIMMLVLAFVLGHVLRRHKFYYLHEASASLLIGLIVGGLANISNTEENIRKWFNFHEEXXXXXXXXXXXXQSGFSLQPKPFFSNFGAIITFAILGTFISSMVTGILVYLGGIFLLMFRLPFQECMMFGALISATDPVTILAIFQELGCDTNLYALVFGESVLNDAVAISLYRTMLSVRQHAATNQSMLTAVWRFIETFFGSMSTGAAVALSSALLFKYAGLGIDNLQNLECCLFVLFPYLSYMLAEGLGLSGIVAILFCGIVMKHYTFSNLSEKSQTFTAGFFELISSLAETFVFIYMGLDIATEQQSWSHVGFIFFSILFIGVARAANVFPCAYFINFVRPESRKIPMKHQKALWYSGLRGAMAFALALQSIHELPDGHGEXXXXXXXXXXXXXXXXXGGSTATMLEALEVTGDSQVVLFGESSDEESDYR
A9NW71______________MAELPLSPSDSPGKAAIETQAAGVGILLQIMMLVLAFVLGHVLRRHKFYYLHEASASLLIGLIVGGLANISNTEENIRKWFNFHEEFFFLLLLPPIIFQSGFSLQPKPFFSNFGAIITFAILGTFISSMVTGILVYLGGIFLLMFRLPFQESLMFGALISATDPVTILAIFQELGCDTNLYALVFGESVLNDAVAISLYRTMLSVRQHAATNPSLFTAVWRFIETFFGSMSTGAAVALSSALLFKYAGLGIDNLQNLECCLFVLFPYLSYMLAEGLGLSGIVAILFCGIVMKHYTFSNLSENSQTFTAGFFELISSLAETFVFIYMGLDIATEQQSWSHVGFIFFSILFIGVARAANVFPCAYLINFVRPASRKIPMKHQKALWYSGLRGAMAFALALQSIHELPDGHGQTIFTATTAIVVLTVLLIGGSTATMLETLEVTGDSQGVLLGESSEEESDYR

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
21	66		33		0.997452
47			16	83	0.994512
105		83		16	0.994512
137	16		83		0.994512
839	16		83		0.994512
882			62	37	1.0
883	62	37			1.0
884	37			62	1.0
1272		70	30		1.0
1273	70			30	1.0
1279	70	30			1.0
1281	70			30	1.0
1282			70	30	1.0
1283		70	30		1.0
1284	70		30		1.0
1285		30	70		1.0
1286	70			30	1.0
1289		30		70	1.0
1290	30		70		1.0
1291		30	70		1.0
1309	80			20	0.999996
1310	25			75	1.0
1446			90	10	0.90298
1447			90	10	0.90298
1448		10	90		0.90298
1449			90	10	0.90298
1450			90	10	0.90298
1451			90	10	0.90298
1452	10	90			0.90298
1627		42		57	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
206	220	TCAAT TCAAT TCAAT	15

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain