SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6279

Length: 1457 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6279

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	43%
Blast2go	f-box domain containing protein	-	-	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	F-box domain, cyclin-like	IPR001810	-	0.0	57%
Blast2go	F-box domain, Skp2-like	IPR022364	-	0.0	57%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: A9TGM3

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MSQTTASTEEEDATSSSWAFNDEYLPNDVAFYIASRLQVPELCALASCSVFWKQLCASDLIWVSLSKERWPTLDLSEDSIHKKEENSKQSENAGNCDHPKLGWRAFYIKWQTEMAERAFSVVELVKQSAHYESLEIGDYQRAMELLKKTEMGFKDVQLYLLTPKCSVLVNLIGLHYCLVWLGIQSEYVKAALCTNQIGDRNVCLRWWILGQWVNGFRRGDQMHVVIASLTKLLEPKQEQFLYVIQRGIMHEVLRVQISADFRTSAWIARDMHSQR*

Protein Length: 277

Fln nts: CGTCGTGACCTTGGCTGTCATTGGTGATTACATTAGTTATACTCAGGAGACCTTGTGAATTATAAGGCCATCTACTGAAACCAGAGTTTGCCACTTTTGAGGTCATATACTACAGACCAGTTTGCAGATTATAGGATACT_-_ATGAGTCAAACAACTGCAAGCACTGAAGAAGAAGACGCGACAAGCTCTTCATGGGCTTTCAATGACGAATATCTACCCAATGATGTGGCTTTCTATATTGCATCCAGGCTTCAGGTTCCAGAGCTTTGTGCATTGGCTTCTTGCTCTGTGTTTTGGAAACAACTATGTGCATCAGATCTCATATGGGTTTCACTGTCAAAAGAGAGATGGCCTACTCTGGACTTATCTGAAGATTCCATTCATAAAAAAGAAGAAAATTCAAAACAATCGGAAAATGCAGGAAATTGTGACCATCCTAAACTGGGATGGCGGGCATTCTATATCAAATGGCAGACAGAGATGGCTGAAAGAGCATTTTCTGTAGTGGAGCTTGTAAAACAAAGTGCCCACTATGAGTCTCTTGAAATAGGAGATTACCAGAGAGCTATGGAACTATTAAAAAAGACTGAAATGGGATTCAAAGATGTCCAATTGTATCTACTCACACCTAAGTGTAGTGTTCTTGTGAACCTTATTGGTCTGCACTATTGCTTAGTTTGGCTAGGAATCCAGAGTGAATACGTCAAAGCAGCTCTTTGTACGAACCAAATTGGTGACAGGAATGTTTGCTTGAGATGGTGGATACTTGGACAATGGGTGAATGGTTTTCGAAGGGGCGATCAAATGCATGTAGTAATAGCATCATTGACAAAATTATTAGAGCCCAAGCAAGAGCAATTTCTGTATGTCATTCAGCGTGGCATAATGCATGAGGTCTTACGTGTTCAAATCTCAGCTGACTTCAGAACAAGCGCCTGGATTGCCCGAGACATGCATTCTCAACGGTAGTGAAAATATTTGTGTACAGGCACAGATCTCTCAGTTTATTCATTATTAGTGCAATATTTTAAAATGTCTGGAATTCATTGATGTTTCCAAAACCAGCCCCTTTAAACTTCTAAAAGGGCCCTATAAGTAGTCTGTATTGCACAAAAACTGTCTTGTTTGATTGTATACGGTTCAAAGAGTGTATGTAAGTAATATCTCAAAAGCAATCCATTCATGTTTATAACACATAATTCTGAATATTATGTAAATATGAAGGTCAGTATCGATTGGGGTTATCTTGGGTGGTTGGAGAGAATGGTTGTTATCTTTCCACCTAGGTTCAAATTCTTGCTAGTAACATGATGAGCTATAATGCCTTGATAAATATTGTTGTAATGGCTTTGTGCCAGTGAATATTGTTATATTGACTTCAAGCCTTGTGAATCCTTAATTGAGTATACTTGTGACATATTGTTGCAATGGCTCTGTGCCTATGAATATTGTTATATT

Fln Alignment:

sp_v1.1_unigene6279___DEYLPNDVAFYIASRLQVPELCALASCSVFWKQLCASDLIWVSLSKERWPTLDLSEDSIHKKEENSKQSENAGNCDHPKL-GWRAFYIKWQTEMAERAFSVVELVKQSAHYESLEIGDYQRAMELLKKTEMGFKDVQLYLLTPKCSVLVNLIGLHYCLVWLGIQSEYVKAALCTNQIGDRNVCLRWWILGQWVNGFRRGDQMHVVIASLTKLLEPKQEQFLYVIQRGIMHEVLRVQISADFRTSAWIARDMHSQR
A9TGM3______________ESHLPIDVVHQIVTILSERDTCSLGRCSRYWHAICSSDVVWFHLFHKRW----------------------AGLYGQRFLQGWQAAYRNSHVEMRKRARAVVELIKARTRHESVEVADYQKGLMMLSTTGLALYDVFLFLFTSAQSVLVNLIGLHYCLFHLGAQLKELKEFLARSKVGERKVCLRWWSMGGWANGFRRRDEMQIRMASIANLTEPESVPLFQILDRGTLHEVLRVQISADFESSAWVQRDMHSQR

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
88			33	66	0.997452
89			33	66	0.997452
90			33	66	0.997452
251			25	75	0.996473
256			75	25	0.996473
257			25	75	0.996473
258	25			75	0.996473
261	75			25	0.996473
262			75	25	0.996473
263	75		25		0.996473
270	25			75	0.996473
271		25	75		0.996473
273		25	75		0.996473
274	25	75			0.996473
302	66		33		0.997452
649		20		80	0.995493
659	80	20			0.995493
662	20		80		0.995493
663		20	80		0.995493
677		20		80	0.995493
696	83		16		0.994512
697			83	16	0.994512
698	83	16			0.994512
703	83	16			0.994512
704		16		83	0.994512
705	83			16	0.994512
706		83		16	0.994512
708			16	83	0.994512
711	83			16	0.994512
712	66		33		1.0
713			83	16	0.994512
1054	60		40		1.0
1195	77			22	0.999999
1279		71		28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain