SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6271

Length: 1122 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene6271 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NRT1.5; NRT1.5 (NITRATE TRANSPORTER 1.5); nitrate transmembrane transporter/ transporter	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	proton-dependent oligopeptide transport family protein	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oligopeptide transporter	IPR000109	-	0.0	79%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	0.0	79%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 273 aas, your sequence is shorter than subject: 317 - 594

Fln protein: MKMERQNNSNFMGRLANSDVGKFLRQAFTKEKERSGFDSEEYNDDGPEPEYGGKDHREIYTKDGTVNRFGKLALKGKSGGWKAAALVLVNQGLATLGFFGVGVNLVLFLTRVIQQSNASAANDVSKWTGTVYIFSLVGAFLSDSYWGRYRTCSVFQVIFTVGLVLLSLTSYLFLIKPAGCGSATVNCEKASTVELIVFYMSIYLIALGYGGYQPNIATFGADQFDEMDEVEGASKVAFFSWFYLAMNLGQLFSNSIIGYFENIGNWVFGFWMSAGSAALALIIFLVGTPYYRHFRPGGNPIPRVAQVFVRHLGNGM*

Protein Length: 318

Fln nts: GCCTGATCATCGATCGGGAAGTTCAAGATCGTAAGAGCGTTTTCAAATCGTCAAAGAAAACCCCAAGGG_-_ATGAAAATGGAACGGCAGAACAATAGCAATTTCATGGGCCGTCTCGCCAATTCTGATGTGGGAAAATTTCTGCGCCAAGCGTTTACGAAGGAAAAGGAGCGCAGTGGGTTCGACTCCGAAGAATATAACGATGATGGTCCAGAACCAGAATACGGAGGAAAGGACCATCGAGAGATCTATACAAAAGATGGTACTGTTAACAGGTTTGGTAAACTGGCTTTGAAAGGCAAGAGTGGTGGGTGGAAGGCTGCAGCTTTGGTATTAGTAAACCAAGGATTGGCGACTCTGGGATTCTTTGGTGTTGGTGTAAACCTTGTCCTATTCCTGACTCGAGTGATTCAACAGAGCAATGCATCCGCAGCAAATGATGTGAGCAAATGGACAGGAACTGTATATATCTTCTCCCTCGTTGGAGCATTTTTGAGTGATTCTTACTGGGGTCGATACCGAACATGTTCTGTTTTTCAGGTCATTTTCACAGTGGGTTTAGTGCTTCTATCCTTGACATCGTATCTGTTCTTAATCAAGCCAGCTGGATGTGGAAGTGCGACAGTAAACTGTGAAAAAGCATCGACTGTTGAGCTTATAGTGTTTTACATGTCGATTTATCTCATAGCTCTAGGGTATGGTGGGTACCAACCCAATATTGCAACATTTGGAGCAGACCAATTTGATGAAATGGATGAAGTTGAAGGCGCTTCAAAAGTAGCATTCTTTAGTTGGTTCTACTTGGCAATGAATCTCGGGCAACTATTCTCAAACTCAATAATTGGTTACTTCGAAAACATTGGCAATTGGGTTTTTGGATTCTGGATGTCGGCAGGGTCAGCCGCATTGGCTTTGATCATATTTTTAGTGGGAACACCTTATTACAGACACTTCAGGCCGGGAGGTAACCCCATTCCTCGTGTTGCCCAAGTTTTTGTGCGGCATTTAGGAAATGGAATGTGAGGTCTCCATCAGATGGTGAGAAACTTTACGAGCTCCAAGACAAGGCCTCCGCAATCAGCGGAAGCAGGAAGATAACGCATAGTGAAGAGTTCAGGTTTCTGA

Fln Alignment:

sp_v1.1_unigene6271___GKDHREIYTKDGTVNRFGKLALKGKSGGWKAAALVLVNQGLATLGFFGVGVNLVLFLTRVIQQSNASAANDVSKWTGTVYIFSLVGAFLSDSYWGRYRTCSVFQVIXXXXXXXXXXXXXXXLIKPAGCGSATVNCEKASTVELIVFYMSIYLIALGYGGYQPNIATFGADQFDEMDEVEGASKVAFFSWFYLAMNLGQLFSNSIIGYFENIGNWVFGFWMSAGSAALALIIFLVGTPYYRHFRPGGNPIPRVAQVFVRHL
A9NVR2______________GKASEDEYTGDGSVDFWGRPSVKENTGNWRACPFILGNECCERLAYYGINTNLVTYLTKRLHQGNAAAAKSVTTWAGTCYLTPLFGAVLADAYWGRYWTIAAFSTIYFIGMATLTLSASVSSLKPPSCIGS--DCPTANLAQYGVFFLGLYLIALGTGGIKPCVSSFGADQFDDTDPKEKKKKGSFFNWFYFSINVGALVSSSVLVWVQDNVGWGWGFGIPTLFMGLAIGSFFSGTPLYRLQKPGGSPVTRMCQVVVASL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain