SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6270

Length: 1106 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6270

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	fasciclin-like domain-containing protein	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	fasciclin-like domain-containing protein	-	-	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXQ4

Fln msg: your sequence is shorter than subject: 233 - 464

Fln protein: VLTKLSTSASINGPKSPLTAAPVSYTAMAPGPSLAPAPAPGPSSGHHWFDGESQVKDFIDTLSLFGGYSEMADILVNLTSLASELAKLVSEGYRITVLAPNDEAMGKLTTEQLSEVGAPEHIVYYHIIPDYQTEESLYNAVRRFGKIKYDTLRVPHKLLSKEADGTVVFGEGEEAAHLYDNDIYIDGRISVQGIDKVLFPPQQAGTSSHGNVGRKLEEQTAGQRRGRLIGSV*

Protein Length: 234

Fln nts: GTTTTAACTAAGTTATCAACTTCAGCTTCCATTAATGGCCCCAAGAGCCCCCTCACGGCAGCTCCCGTTAGTTATACTGCAATGGCTCCTGGGCCTTCTTTGGCCCCTGCCCCTGCTCCTGGACCTTCCTCTGGTCACCATTGGTTTGACGGAGAGAGCCAAGTTAAGGATTTTATTGATACATTGTCTCTTTTTGGAGGGTACAGTGAGATGGCAGATATTCTTGTGAATCTAACATCTCTGGCTTCTGAACTAGCCAAGCTTGTCTCTGAGGGATACAGGATTACTGTCCTGGCTCCCAATGATGAAGCCATGGGTAAGCTGACCACAGAACAACTGAGCGAAGTGGGTGCCCCTGAGCACATTGTGTATTATCACATCATTCCGGATTATCAGACAGAAGAAAGTTTATATAACGCAGTGAGAAGATTTGGGAAGATTAAGTATGATACTCTGAGGGTGCCTCACAAGCTGCTTTCCAAGGAAGCAGATGGTACTGTTGTGTTTGGAGAAGGAGAAGAGGCAGCTCATCTGTATGATAATGATATTTATATTGATGGCAGGATCTCTGTTCAAGGTATTGATAAGGTGCTCTTTCCTCCCCAGCAAGCAGGCACCAGCTCCCATGGCAACGTTGGCAGAAAGTTAGAAGAACAAACAGCAGGTCAACGCAGAGGGAGGTTGATTGGATCGGTATGA___AATTTCTGCGCAAATTTATTAAGAAGTAGCTTTTGTTAAGCTACCAATAAACCAGGTCTTCAGGCAGGAGAATGAGTATATACTGTTGGCATCTGTGTTTCTGTATGACATATTGTTTTTATGTAAGAAAATGTAACTTGTGAGGTAGAGGACTTGATACGATTCTGTGTAAATTCTTGAGGATTGTAAATGAGCGAGCCAGTTGTGTAGATTCTGCAGAGTGTGGGAGGGAAGGTCAGTGAAAACTTTTGTTGTAATGCAAATATGTGTGACAGATGGATCCACTGTATTGGAAGTTGGGATTATGATGATGGAGTTTTTCTTTGGGAACCGTGGAAGAAAATATTCATTGATGTAaATAATGGTTTACAACTCCATTGGAATAGCATCATGGAAATGGTTTATTT

Fln Alignment:

sp_v1.1_unigene6270___HHWFDGESQVKDFIDTLSLFGGYSEMADILVNLTSLASELAKLVSEGYRITVLAPNDEAMGKLTTEQLSEVGAPEHIVYYHIIPDYQTEESLYNAVRRFGKIKYDTLRVPHKLLSKEADGTVVFGEGEEAAHLYDNDIYIDGRISVQGIDKVLFPPQQAGTSSHGNV---GRKLEEQTAGQ-------RRGRLI
A9NXQ4______________HYWFDGESQVKDFINTLVLYGGYNEMADILVNLTSLASELAKLVSEGYKVTVLAPNDEAMGELTTEQLSEPGAQEHIMYYHIIPEYQTEESMYNAVRRFGKMKYDTLRIPHKITSQEADGTVLFGEGEQSAHLFDHDIYVDGRISVQGIDKVLFPPQPKDVKTVKTVKTKGRKLREEEEEEAVNESQPTRGRLL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
331	14		85		0.993533
334		85	14		0.993533
345	88			11	0.923564
347			11	88	0.923564
360	11		88		0.923564
401	90		10		0.90298
402	90		10		0.90298
454		54		45	1.0
490		33	66		1.0
620		16	83		0.999991
692		85	14		0.999981
700	85		14		0.999981
730	14			85	0.999981
736		35		64	1.0
991	16	16	66		0.988813
1008		33		66	1.0
1057	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain