SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6264

Length: 794 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6264

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RNX6_PHYPA	-	-	82%
FL-Next	sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress).	-	-	32%
Blast2go	protein	-	-	83%

Source	InterPros	Term	Type	Identity
Blast2go	RNA polymerase, beta subunit, protrusion	IPR007644	-	83%
Blast2go	RNA polymerase Rpb2, domain 3	IPR007645	-	83%
Blast2go	RNA polymerase Rpb2, domain 4	IPR007646	-	83%
Blast2go	DNA-directed RNA polymerase, subunit 2	IPR015712	-	83%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
212	50	50			1.0
213	50		50		1.0
215		50	50		1.0
217	50			50	1.0
218	50		50		1.0
220		50	50		1.0
221		50	50		1.0
222	50			50	1.0
223	50			50	1.0
224	50		50		1.0
226		50	50		1.0
288		25		75	0.996473
346	75	25			0.996473
347	25		75		0.996473
480		14	85		0.993533
487	85	14			0.993533
489			14	85	0.993533
491		14	85		0.993533
493			85	14	0.993533
599	75		25		0.996473
671	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain