SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6251

Length: 1442 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene6251 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial substrate carrier n=4 Tax=Malpighiales RepID=B7UB90_POPTR	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	mitochondrial phosphate transporter	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%
Blast2go	cell wall	GO:0005618	Cellular Component	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mitochondrial substrate/solute carrier	IPR018108	-	0.0	81%
Blast2go	Mitochondrial carrier domain	IPR023395	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQZ5

Fln msg: Separated hits, possible frame ERROR between 281 and 292,

Fln protein: MNPFDFYVASVCGGILSSGLTHTGVTPLDIVKCNMQANPSKYRSIRTGFVKLVxxxxxGALFTGWLPTLLGYSVQGALKFGFYEFFKILYSDMLGPKKAEERRTFIYLAGSASAEFIADIALCPFEAVKVRAQTQPNFTKSFLQALTEILDTEGYNGLYKGLLPLWGRQIPYTMVKFACFESTVENIYKYAIPVPKEDCSKALQLGVSFAAGYLAGVSSAVVSHPADNLISLLNNSKGTTVRDVIKKIGVVALFTRGLPLRILMVGTLTGAQWGIYDAFKIFTGMPTSGTPTVLASGTSQESR*

Protein Length: 305

Fln nts: ATGGGGAGACATTCAAATTATCGAAGCTTGCTCCTTCAATTTCCTGATTGCGGTATCTCCATGAAAATTTCTGTGATAAAGCCATCAATGGAGGTGGAGCTGAATTGACTCCTCGTAAT_-_ATGAATCCGTTCGACTTCTACGTTGCTTCCGTATGCGGGGGAATTTTGAGCTCTGGGCTGACCCATACAGGTGTCACGCCCCTCGATATTGTTAAATGTAATATGCAGGCAAATCCATCGAAGTACAGGAGCATTAGGACTGGATTTGTTAAGTTAGTGAAxxxxxxxxxxxxTGGAGCCTTATTCACAGGATGGCTGCCGACCCTCTTGGGGTACAGCGTTCAAGGTGCCCTCAAGTTTGGATTCTATGAATTCTTCAAGATATTATATTCGGATATGCTCGGACCCAAGAAAGCAGAAGAGCGCAGGACCTTCATATATCTGGCAGGTTCTGCTTCAGCAGAGTTTATTGCCGACATAGCTCTCTGCCCATTTGAAGCTGTCAAAGTTAGGGCGCAAACACAGCCCAATTTTACAAAGAGTTTCTTACAAGCTTTGACTGAAATATTGGATACAGAAGGATATAATGGGTTATATAAGGGCCTTTTACCTCTGTGGGGACGCCAGATACCATATACAATGGTGAAATTTGCATGCTTTGAGAGTACTGTGGAGAATATATACAAATACGCCATTCCGGTTCCAAAAGAGGATTGCTCAAAGGCTTTGCAGCTGGGAGTAAGCTTTGCAGCCGGCTATCTTGCAGGTGTATCCAGTGCTGTAGTCTCACATCCTGCAGATAACTTGATCTCCCTTCTTAACAATAGCAAGGGTACAACTGTCAGGGATGTGATTAAGAAGATTGGAGTGGTTGCATTATTCACCAGAGGTTTGCCATTGAGGATCCTGATGGTGGGCACACTCACAGGAGCACAGTGGGGAATCTACGACGCCTTCAAGATTTTCACTGGAATGCCTACTTCTGGAACACCGACTGTGTTGGCGAGTGGAACATCGCAGGAAAGTAGGTGA___TTATTACAGAAGATTGTGAGGAAATAACACATTTAGTGAAAAGTTTGAGAATAAGAGAGAGAAGAATTTTGTGTGGAGAAGCCAGCATTAAATTTGTTGACAGGAAAAATACAGTCGCTTTGTGAGAATTTGAGATTGGAATAATAACAATTAATTGTGTTTGTGCTATTCATGTATTTGACATGAAATGGTCCAGCTTCTTCCTTTCTAAACAGAATAAGAGGCTTGGACATCGTACAAATATTAAATCTCTGTTTGCATATAGTTGGCTGCCAACCTAAATGCAAAACAAAGTGCAGGAATATACAGATTAAGTAATTTCTCTATTTGCATGTATTTGAATGCCAATCTAAATGCAAAACAAAGTACAGATAAATACTGATTAAGGAATTTGGATTTGGGTTGGAAGTACT

Fln Alignment:

sp_v1.1_unigene6251___MNPFDFYVASVCGGILSSGLTHTGVTPLDIVKCNMQANPSKYRSIRTGFVKLVNxxxxGALFTGWLPTLLGYSVQGALKFGFYEFFKILYSDMLGPKKAEERRTFIYLAGSASAEFIADIALCPFEAVKVRAQTQPNFTKSFLQALTEILDTEGYNGLYKGLLPLWGRQIPYTMVKFACFESTVENIYKYAIPVPKEDCSKALQLGVSFAAGYLAGVSSAVVSHPADNLISLLNNSKGTTVRDVIKKIGVVALFTRGLPLRILMVGTLTGAQWGIYDAFKIFTGMPTSGTPTVLASGTSQESR
A9NQZ5______________MTPIDFYAACMLGGVFSCGLTHTGLTPLDLLKCNMQANPSKYRSIRGGFGKLVNxxxxGALFTGWLPTLLGYSAQGAFKFGFYEFFKLSYSGILGHTNAEENRTLIHLAGSASAEFIADIALCPFEAVKIRVQTQSDFTKGFLEVLAEILAAEGFKGLYKGLLPLWGRQIPYTMVKFASYESVVENIYKYALPIPREDCPQAWQLGVSFAAGYIAGISCAVVSHPADNLISLLNNCNGTTVRDAIKKLGVVALFTRGLPLRILMVGTLTGAQHGIYDAFKVFTGMPTAGPPTVMLRRSSQQER

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
511		25		75	1.0
1351	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain