SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6223

Length: 3035 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6223
TATATCGCACGAAAGCACTTTCCGTCAGTCCGCACCGGAAAAACTCGGGATGAATTTCCTGGCCCTAGCCATGTGGGCGCGCGCATACGTCGTGACCTTGGCTGTCACTCGGGGTTAAAAGCGAAACAGTGGAGAGCCGAGAGGAGGGGGAGGAGCAAAACTGGAAGCCAATATTATCAGCAGAGAGAAATCCGAGACAAAATTAGAACAACAAGATGCAGAGGCCGATGCAGCCTCCGGACTATAGTCTCAAGGAAACCTCGCCCCATTTGGGCGACGGTCGTGTCCGGGGTGGATGGATGACGAGCGAGCGCTCAACAAGCACCTACGATCTTGTGGAGCAGATGCAGTATCTGTATGTAAGGGTTGAGAAGGCCAAAGATCTGCCCGCCATGGACATGTCGGGGAGCTGTGACCCTTATGTCGAGGTCCGCCTCGGCAACTATAAGGGTACCACGAAGCACTTTGAGAAGAAATCAAACCCTGAATGGCACCAGGTCTTTGCTTTCTCGAAGGATAGAATCCAGTCGTCCATGGTGGAAGTGGTGGTGAAGGACAAGGACATTGTGAAGGATGATTTCATAGGGCGGGTGACCTTCGACCTTAACGAGGTCCCTACGAGGGTGCCCCCTGATAGCCCTCTGGCGCCTCAATGGTACCATCTGGAGGACCGCAAGGGTTCCAAGATCCCTAAAGGGGAAATCATGCTGGCTGTTTGGATGGGTACCCAGGCGGATGAGTCCTTCCCCGAGGCCTGGCATTCTGACGCGGCCACGGTTCATTCGGACGGCCTGGCGAATATCCGCTCTAAGGTATATCTTTCCCCAAAGCTCTGGTATGTTAGGGTTAATGTTATAGAGGCCCAAGATCTTCAGCCCAGTGATAAGGCCCGGTATCCTGAAGTGACTGTGAAGGCTCAGATAGGTAACCAGATGTTGAAGACCAAGTTTTCGCAGAGTCGGACCACGAGCCCCCTCTGGAACGAAGACCTCCTCTTTGTGGCAGCTGAGCCATTTGAAGAACATCTGGTGCTTAGTGTTGAGGATCGGACAGGGCCCAACAAGGATGAAGTGTTGGGGAAATGTATCATTCCTCTGAACATTATACCAAGGAGAATGGATCACAAGACTGTGAATTCGAAGTGGTTTAACCTGGAGAAACCGACGCTCGCCGACATGGAGCCCAAGAAAAAGGAGATAAAGTTTGCGAGCCGGATACACTTGAGGCTCTGTTTGGACGGCGGGTATCATGTTCTGGATGAGTCGACACATTACAGCAGCGATCTGAGGCCAACAGCGAAACAATTGTGGAAACCCTCGATTGGGGTTTTGGAGGTTGGAATTCTGAGTGCTCATGGATTGCTGCCTATGAAGACCAAGGATGGAAGAGGCACCACGGATGCCTACTGTGTTGCCAAGTATGGGCAGAAGTGGGTTAGGACCAGGACCATTATCGATAACTTTATTCCTAAATGGAATGAACAGTATACATGGGAGGTTTTTGATCCGTGCACTGTGATCACAGTTGGAGTTTTTGATAATTGTCATCTGCATGGCGGGGGCGGTAATGACAAGGGTTCCAAGGATGCTAAGATAGGCAAGGTACGTATTCGGCTCTCAACTCTTGAAACTGATCGGGTTTATACTCATGCTTATCCTTTGCTGGTTCTGCATCCCTCTGGTGTGAAGAAAATGGGTGAGCTTCAGCTCGCAGTGCGGTTCACTTGCTCATCTCTGGTCAACATGATGCACATTTATACTACCCCTCTGTTGCCCAAGATGCATTACCTGCATCCCCTGTCTGTGGGTCAGCTGGAGAGCCTGCGGTATCAAGCGATGAACATAGTGGCAATGAGGCTAAGCAGGGCCGAGCCTCCGCTGCGGAAAGAGGTGGTGGAGTATATGATAGATGTGGATTCTCATATGTGGAGCATGCGCCGCAGCAAGGCGAATTTCTTCAGGATCATGTCCGTTCTGTCCGGGCTGATTGCGGTGGGCAAGTGGTTTGATGAGATTTGCAACTGGAAGAACCCCATCACGACAGTGCTGGTGCATGTCCTCTTTCTCATTCTGGTATGGTACCCGGAGCTCATCCTGCCCACTGTATTTCTTTACATGTTCCTGATTGGCATATGGCATTATCGATGGCGCCCTCGACACCCGCCTCACATGGACACTCGCCTCTCCCATGCCGAGGCGGTGCATCCTGATGAACTCGACGAGGAATTCGACACTTTCCCAACTTCAAGAAGTTCTGAGATAGTGAGGATGCGCTACGATCGGTTGAGGAGTGTTGCGGGCAGAATACAGACTGTGGTCGGAGACTTGGCAACACAGGGTGAAAGATTTCAGTCTCTTTTGAGCTGGAGAGATCCCCGTGCCACAACCATATTTGTCACCTTTTGTTTGTTCGCGGCCATAATTCTATATGTCACTCCGTTCCGAGTAATGTCCGTTATATCAGGATTTTATATGCTGCGCCACCCAAGGTTTCGATACAAACTTCCTTCTGTTCCGCTTAATTTCTTCAGGAGGTTGCCTGCACGAACTGATAGCATGTTGTAAGGAGTTTGATCAATCAATTCTGATGGTATGTTATTTTGTTCTAGTTGTTTTGTCCTTATTGCTCTCCAAACAAGCCCAATATCTTTATCTGCTTCATTTTGCCACTTTTGCTGGAGCTGCCCCTCTGAGGAGACATTGGTAATCTGGCTTGGGAAAACTATAGTTCCATGGGAGCACTGTTAACTTCCATTTTAATCAGAAAAGTTGGCCCGTCAGCATTTTTTGTACTCCAATTCTGCTGGAGATTACAGTAAATAGTGGGCAGATCTGATGTATACGCCTATTGTATGTTAGTGGAGCTTGTGAATTATGTCGTTATATTTATCCTGAAACTTATACAGGGTCATCTTGTACAGCAAGATGGATCCGTTTGGCAATCCATTATTTCTGAAACGGTGCCCTTGTTTTGTTAATAAGCATTAGATGCTGGATTTATGAATTCAAATAATTTGTCTTGTATTCTGCTTCCAA

Ace file of the UniGene sp_v1.1_unigene6223

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Anthranilate phosphoribosyltransferase-like protein n=8 Tax=rosids RepID=Q9M2R0_ARATH	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	c2 domain-containing protein	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	89%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	89%

Source	InterPros	Term	Type	Identity
Blast2go	C2 calcium-dependent membrane targeting	IPR000008	-	89%
Blast2go	C2 calcium/lipid-binding domain, CaLB	IPR008973	-	89%
Blast2go	Phosphoribosyltransferase C-terminal	IPR013583	-	89%
Blast2go	C2 membrane targeting protein	IPR018029	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL63

Fln msg:

Fln protein: MQRPMQPPDYSLKETSPHLGDGRVRGGWMTSERSTSTYDLVEQMQYLYVRVEKAKDLPAMDMSGSCDPYVEVRLGNYKGTTKHFEKKSNPEWHQVFAFSKDRIQSSMVEVVVKDKDIVKDDFIGRVTFDLNEVPTRVPPDSPLAPQWYHLEDRKGSKIPKGEIMLAVWMGTQADESFPEAWHSDAATVHSDGLANIRSKVYLSPKLWYVRVNVIEAQDLQPSDKARYPEVTVKAQIGNQMLKTKFSQSRTTSPLWNEDLLFVAAEPFEEHLVLSVEDRTGPNKDEVLGKCIIPLNIIPRRMDHKTVNSKWFNLEKPTLADMEPKKKEIKFASRIHLRLCLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGVLEVGILSAHGLLPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDNFIPKWNEQYTWEVFDPCTVITVGVFDNCHLHGGGGNDKGSKDAKIGKVRIRLSTLETDRVYTHAYPLLVLHPSGVKKMGELQLAVRFTCSSLVNMMHIYTTPLLPKMHYLHPLSVGQLESLRYQAMNIVAMRLSRAEPPLRKEVVEYMIDVDSHMWSMRRSKANFFRIMSVLSGLIAVGKWFDEICNWKNPITTVLVHVLFLILVWYPELILPTVFLYMFLIGIWHYRWRPRHPPHMDTRLSHAEAVHPDELDEEFDTFPTSRSSEIVRMRYDRLRSVAGRIQTVVGDLATQGERFQSLLSWRDPRATTIFVTFCLFAAIILYVTPFRVMSVISGFYMLRHPRFRYKLPSVPLNFFRRLPARTDSML*

Protein Length: 784

Fln nts: TATATCGCACGAAAGCACTTTCCGTCAGTCCGCACCGGAAAAACTCGGGATGAATTTCCTGGCCCTAGCCATGTGGGCGCGCGCATACGTCGTGACCTTGGCTGTCACTCGGGGTTAAAAGCGAAACAGTGGAGAGCCGAGAGGAGGGGGAGGAGCAAAACTGGAAGCCAATATTATCAGCAGAGAGAAATCCGAGACAAAATTAGAACAACAAG_-_ATGCAGAGGCCGATGCAGCCTCCGGACTATAGTCTCAAGGAAACCTCGCCCCATTTGGGCGACGGTCGTGTCCGGGGTGGATGGATGACGAGCGAGCGCTCAACAAGCACCTACGATCTTGTGGAGCAGATGCAGTATCTGTATGTAAGGGTTGAGAAGGCCAAAGATCTGCCCGCCATGGACATGTCGGGGAGCTGTGACCCTTATGTCGAGGTCCGCCTCGGCAACTATAAGGGTACCACGAAGCACTTTGAGAAGAAATCAAACCCTGAATGGCACCAGGTCTTTGCTTTCTCGAAGGATAGAATCCAGTCGTCCATGGTGGAAGTGGTGGTGAAGGACAAGGACATTGTGAAGGATGATTTCATAGGGCGGGTGACCTTCGACCTTAACGAGGTCCCTACGAGGGTGCCCCCTGATAGCCCTCTGGCGCCTCAATGGTACCATCTGGAGGACCGCAAGGGTTCCAAGATCCCTAAAGGGGAAATCATGCTGGCTGTTTGGATGGGTACCCAGGCGGATGAGTCCTTCCCCGAGGCCTGGCATTCTGACGCGGCCACGGTTCATTCGGACGGCCTGGCGAATATCCGCTCTAAGGTATATCTTTCCCCAAAGCTCTGGTATGTTAGGGTTAATGTTATAGAGGCCCAAGATCTTCAGCCCAGTGATAAGGCCCGGTATCCTGAAGTGACTGTGAAGGCTCAGATAGGTAACCAGATGTTGAAGACCAAGTTTTCGCAGAGTCGGACCACGAGCCCCCTCTGGAACGAAGACCTCCTCTTTGTGGCAGCTGAGCCATTTGAAGAACATCTGGTGCTTAGTGTTGAGGATCGGACAGGGCCCAACAAGGATGAAGTGTTGGGGAAATGTATCATTCCTCTGAACATTATACCAAGGAGAATGGATCACAAGACTGTGAATTCGAAGTGGTTTAACCTGGAGAAACCGACGCTCGCCGACATGGAGCCCAAGAAAAAGGAGATAAAGTTTGCGAGCCGGATACACTTGAGGCTCTGTTTGGACGGCGGGTATCATGTTCTGGATGAGTCGACACATTACAGCAGCGATCTGAGGCCAACAGCGAAACAATTGTGGAAACCCTCGATTGGGGTTTTGGAGGTTGGAATTCTGAGTGCTCATGGATTGCTGCCTATGAAGACCAAGGATGGAAGAGGCACCACGGATGCCTACTGTGTTGCCAAGTATGGGCAGAAGTGGGTTAGGACCAGGACCATTATCGATAACTTTATTCCTAAATGGAATGAACAGTATACATGGGAGGTTTTTGATCCGTGCACTGTGATCACAGTTGGAGTTTTTGATAATTGTCATCTGCATGGCGGGGGCGGTAATGACAAGGGTTCCAAGGATGCTAAGATAGGCAAGGTACGTATTCGGCTCTCAACTCTTGAAACTGATCGGGTTTATACTCATGCTTATCCTTTGCTGGTTCTGCATCCCTCTGGTGTGAAGAAAATGGGTGAGCTTCAGCTCGCAGTGCGGTTCACTTGCTCATCTCTGGTCAACATGATGCACATTTATACTACCCCTCTGTTGCCCAAGATGCATTACCTGCATCCCCTGTCTGTGGGTCAGCTGGAGAGCCTGCGGTATCAAGCGATGAACATAGTGGCAATGAGGCTAAGCAGGGCCGAGCCTCCGCTGCGGAAAGAGGTGGTGGAGTATATGATAGATGTGGATTCTCATATGTGGAGCATGCGCCGCAGCAAGGCGAATTTCTTCAGGATCATGTCCGTTCTGTCCGGGCTGATTGCGGTGGGCAAGTGGTTTGATGAGATTTGCAACTGGAAGAACCCCATCACGACAGTGCTGGTGCATGTCCTCTTTCTCATTCTGGTATGGTACCCGGAGCTCATCCTGCCCACTGTATTTCTTTACATGTTCCTGATTGGCATATGGCATTATCGATGGCGCCCTCGACACCCGCCTCACATGGACACTCGCCTCTCCCATGCCGAGGCGGTGCATCCTGATGAACTCGACGAGGAATTCGACACTTTCCCAACTTCAAGAAGTTCTGAGATAGTGAGGATGCGCTACGATCGGTTGAGGAGTGTTGCGGGCAGAATACAGACTGTGGTCGGAGACTTGGCAACACAGGGTGAAAGATTTCAGTCTCTTTTGAGCTGGAGAGATCCCCGTGCCACAACCATATTTGTCACCTTTTGTTTGTTCGCGGCCATAATTCTATATGTCACTCCGTTCCGAGTAATGTCCGTTATATCAGGATTTTATATGCTGCGCCACCCAAGGTTTCGATACAAACTTCCTTCTGTTCCGCTTAATTTCTTCAGGAGGTTGCCTGCACGAACTGATAGCATGTTGTAA___GGAGTTTGATCAATCAATTCTGATGGTATGTTATTTTGTTCTAGTTGTTTTGTCCTTATTGCTCTCCAAACAAGCCCAATATCTTTATCTGCTTCATTTTGCCACTTTTGCTGGAGCTGCCCCTCTGAGGAGACATTGGTAATCTGGCTTGGGAAAACTATAGTTCCATGGGAGCACTGTTAACTTCCATTTTAATCAGAAAAGTTGGCCCGTCAGCATTTTTTGTACTCCAATTCTGCTGGAGATTACAGTAAATAGTGGGCAGATCTGATGTATACGCCTATTGTATGTTAGTGGAGCTTGTGAATTATGTCGTTATATTTATCCTGAAACTTATACAGGGTCATCTTGTACAGCAAGATGGATCCGTTTGGCAATCCATTATTTCTGAAACGGTGCCCTTGTTTTGTTAATAAGCATTAGATGCTGGATTTATGAATTCAAATAATTTGTCTTGTATTCTGCTTCCAA

Fln Alignment:

sp_v1.1_unigene6223___ERSTSTYDLVEQMQYLYVRVEKAKDLPAMDMSGSCDPYVEVRLGNYKGTTKHFEKKSNPEWHQVFAFSKDRIQSSMVEXXXXXXXXXXXXFIGRVTFDLNEVPTRVPPDSPLAPQWYHLEDRKGSKIPKGEIMLAVWMGTQADESFPEAWHSDAATVHSDGLANIRSKVYLSPKLWYVRVNVIEAQDLQPSDKARYPEVTVKAQIGNQMLKTKFS-QSRTTSPLWNEDLLFVAAEPFEEHLVLSVEDRTGPNKDEVLGKCIIPLNIIPRRMDHKTVNSKWFNLEKPTLADME--PKKKEIKFASRIHLRLCLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGVLEVGILSAHGLLPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDNFIPKWNEQYTWEVFDPCTVITVGVFDNCHLHGGGGNDKGS--KDAKIGKVRIRLSTLETDRVYTHAYPLLVLHPSGVKKMGELQLAVRFTCSSLVNMMHIYTTPLLPKMHYLHPLSVGQLESLRYQAMNIVAMRLSRAEPPLRKEVVEYMIDVDSHMWSMRRSKANFFRIMSVLSGLIAVGKWFDEICNWKNPITTVLVHVLFLILVWYPELILPTVFLYMFLIGIWHYRWRPRHPPHMDTRLSHAEAVHPDELDEEFDTFPTSRSSEIVRMRYDRLRSVAGRIQTVVGDLATQGERFQSLLSWRDPRATTIFVTFCLFAAIILYVTPFRVMSVISGFYMLRHPRFRYKLPSVPLNFFRRLPARTDSML
B8LL63______________DKRSSTYDLVEHMQYLYVRVVKARDLPAMDIGGSCDPYVEVKVGNYKGTTKHFEKTANPVWKQVFAFSKDRTPASFLEVVVKDKDLVKDDFIGRIGFDLLEVPTRVPPDSPLAPQWYRLEDKKGEGKVKGELMLAVWLGTQADEAFSEAWHSDAAAVHSDGLVNTRSKVYLSPKLWYVRVNVIEAQDLIPSDKTKFPDFQVKVQLGNQTGKTKPAVPSRNMSPFWNEELLFVAAEPFEDHLILTVEDRLGPNKEEIMGRAIIPLNLVDKRLDHKTAIPRWFSLEKPAVAAAEGDSKKKEVKFASRIFLRLSLDGGYHVLDESTHYSSDLRPTHKHLWKSYIGILQVGILSAQNLLPMKTKDGRGTTDAYCVAKYGQKWVRTRTLIDTLNPKWNEQYTWEVYDPCTVITVGVFDNCHLQGGEKEKSAASPKDARIGKVRIRLSTLETDRVYTHAYPLLVLHPSGVKKMGELHLAVRFSCSSLMNMMHIYTQPLLPKMHYLHPLSVQQLEALRYQAMQIVAMRLSRAEPPLRREVVEYMLDVDSHMWSMRRSKANFFRIMNVLAALTAVGRWFSDICLWKNPVTTVLVHILFLILIWYPELILPTVFLYMFLIGIWQFRFRPRHPPHMDTRLSHAELVHPDELDEEFDTFPSTKSSDIVRMRYDRLRSVAGRIQTVVGDMATQGERLQHLLSWRDPRATTIFVIFCLIAAIILYTTPFQVIAVVFVMYVLRHPRFRHRLPSAPLNFFRRLPARSDSML

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
646		16		83	0.994512
656	83		16		0.994512
704	80		20		0.995493
722	20		80		0.995493
744			66	33	0.997452
1792	12	87			0.992554
1795		87	12		0.992554
1817			12	87	0.992554
1928			11	88	0.923564
1945	87		12		0.992554
2020		10		90	0.90298
2098		22		77	0.999999
2880	51		48		1.0
2904	57			42	1.0
3009		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain