SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6206

Length: 1440 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6206

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nucleic acid binding protein, putative	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	nucleic acid binding	-	-	65%

Source	InterPros	Term	Type	Identity
Blast2go	RNA ligase/cyclic nucleotide phosphodiesterase	IPR009097	-	65%
Blast2go	Predicted eukaryotic LigT	IPR009210	-	65%
Blast2go	Protein kinase A anchor protein, nuclear localisation signal domain	IPR019510	-	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD13

Fln msg: your sequence is longer than subject: 362 - 292

Fln protein: RKRKKIEEKTGVKLCFVSTPKKTTTVVVDGPSVKSVTTATETIQHILDEAVKSPNLQYSHFISLPLAVHTELVEKLTDFQNSVLVLSGSAGKEESDSDSDSNAESSDDDFEVNLNVDGDNVRVKLDVKSIIQDVNAKSQTLYSRARWGIDKSIFIKPATFHLTVLMLKLWNSERVAAAAEILRNVSPKVKEALEGHPIAVTLKGLALMRGSPQKAHVLYARVEEVGSGERLRRACQVIIDAFVEAGLVLEKDSRSPLKLHATVMNTSHRKMKKFQRNKRNVPFDARPILERYGHKDWGEYVISEVHLSQRFSYDENGYYQCCASIPFPEIGRESAVETTVQETTEAAIIAEVTSEETAAEE*

Protein Length: 363

Fln nts: AAAGGAAAAGGAAGAAAATAGAAGAGAAGACTGGTGTAAAACTTTGCTTTGTCTCGACTCCAAAGAAGACCACTACTGTTGTTGTGGATGGGCCATCTGTCAAAAGTGTAACTACAGCCACTGAGACAATTCAACATATTCTTGACGAGGCTGTTAAAAGTCCAAATCTCCAGTATTCTCACTTCATTTCCTTGCCACTGGCTGTTCACACAGAACTTGTAGAGAAGCTCACGGACTTTCAAAACTCTGTTCTAGTTTTAAGTGGTAGTGCTGGCAAAGAGGAAAGTGACTCTGACAGCGATTCAAATGCTGAATCTTCCGACGATGATTTTGAAGTCAATCTCAATGTAGATGGTGATAATGTTCGTGTCAAGTTAGATGTCAAGAGCATCATTCAGGATGTGAATGCAAAATCACAAACCTTATATTCTCGAGCAAGGTGGGGAATAGATAAATCAATTTTCATCAAGCCAGCAACCTTTCATCTGACTGTTCTTATGCTGAAGCTGTGGAATAGTGAACGTGTTGCTGCAGCAGCCGAAATTCTGAGAAATGTTTCACCAAAAGTAAAGGAGGCTTTGGAAGGTCACCCTATTGCAGTGACTCTGAAGGGCTTGGCTCTCATGAGAGGAAGTCCACAAAAAGCCCATGTTTTATATGCTCGAGTTGAGGAAGTTGGCAGTGGTGAACGCTTGCGACGTGCTTGTCAAGTCATAATTGATGCTTTTGTAGAAGCAGGGCTTGTGCTGGAGAAGGATTCTAGGAGCCCTTTGAAGTTACATGCAACGGTGATGAATACCAGTCATAGAAAAATGAAAAAGTTCCAAAGAAACAAGAGGAATGTTCCCTTTGATGCTCGGCCCATATTAGAGCGTTATGGTCACAAAGATTGGGGTGAATATGTGATTTCTGAAGTTCATTTGTCTCAGAGATTTTCGTACGATGAAAATGGGTACTATCAGTGCTGTGCATCCATTCCATTTCCAGAAATTGGTAGGGAATCTGCTGTGGAAACTACTGTGCAGGAGACAACTGAGGCAGCCATAATTGCTGAGGTGACCTCTGAGGAAACTGCTGCGGAGGAGTGA___GGAGGCCATGATTACCAAGGTGACCTCTGAGGAATCTGCTGCTGAGAAAACAGCTGTGGAAGTCTCTGGGGAAATGGCACAGGACTATTGAGCATTCTGCTCTTCATTGAAGGAAAAAATGAAGTATATTATGTTTACTATCTGAGAAATTACCCAGACAAAAGTGATTTGGTCCCTTTCCTGAACCTTCTAGTAGACCTTTCTTACTAGTTTTCTCTATTTAGGGGGCCTTCTGAAGCCAGGGTCAATATTGCCGAGTGACACCTTCACGCAGATAGTTCTGCATCCTAAAAGCTTTAGTCATATTTAGACTCGCTAGGGTCTAGGATTAAATATAATAACTTTTCTTTAT

Fln Alignment:

sp_v1.1_unigene6206___RKKIEEKTGVKLCFXXXXXXXXXXXXDGPSVKSVTTATETIQHILDEAVKSPNLQYSHFISLPLAVHTELVEKLTDFQNSVLVLSGSAGKXXXXXXXXXXXXXXXXXFE-----VNLNVDGDNVRVKLDVKSI---------------IQDVNA---------------------------------------KSQTLYSRARWGIDKSIFIKPATFH
D5AD13______________QKKIEEKTGAKLGFVSTPEKTTVVV-DGPSAKSVTTAAETIQQILEEAVKSPNLQYSHFISLPLAVHTELVEKLTDFQNSVLSLSGTAGKEESDSDSASNAESSEDDFEGKKITVDLNVEDNTEHVKVAMLEIPVNNEISKTPGSISGIENTHAHPADENSNKKEAVAVNLNVDRDNVRVKLDVKSIIQDVNAKSQTLYSRAKWGIDKSIFIKPATFH

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
543		66		33	0.997452
698		20		80	0.995493
700		80		20	0.995493
705			80	20	0.995493
708		80	20		0.995493
709		20		80	0.995493
716		20	60	20	0.99255
920	80	20			0.995493
922		40		60	1.0
942	16			83	0.994512
943		83		16	0.994512
945			16	83	0.994512
946	83		16		0.994512
1003		25	75		0.996473
1108	71		28		1.0
1129			42	57	1.0
1141	71		28		1.0
1203		20		80	0.995493
1205	80			20	0.995493
1206	80	20			0.995493
1208			80	20	0.995493
1209	60		20		0.99255
1211	80	20			0.995493
1212	80	20			0.995493
1213	80			20	0.995493
1214	80			20	0.995493
1215			20	80	0.995493
1217	80	20			0.995493
1218	80			20	0.995493
1222	80		20		0.995493
1223		20		80	0.995493
1224	80			20	0.995493
1225		20		80	0.995493
1226	20			80	0.995493
1274		25		75	0.996473
1275			25	75	0.996473
1278		75	25		0.996473
1281	50		25		0.995533
1295		25	75		0.996473
1300	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain