SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6195

Length: 1446 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6195

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	FIM2; FIM2 (FIMBRIN-LIKE PROTEIN 2); actin binding	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	fimbrin 2	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	82%
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Calponin homology domain	IPR001715	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A879

Fln msg: your sequence is longer than subject: 291 - 134

Fln protein: MCKFLGKKELSAYGSIVLVLTHLSTIFFEDVRNGWVLLEVLDKVAPGMVNWKQASKPPIKMPFRKVENCNQVIRIGKQLKFSLVNVAGNDIVQGNKKLILAYLWQLMRYNMLQLLRNLRLRSSHKEISDLEIMNWANAKVKNTGRASQMESFRDKSLANGIFLLELLSAVEPRVVNWYIVTKGENEEEKRLNATYIISVARKLGCSVFLLPEDIVEVNPKMILILVASIMLWSLTKQTSEDVGISDSENGSVTGSLSNLALDDSTSEASLPLDNGSESASEHSFEESRAE*

Protein Length: 292

Fln nts: AAGGGCAAAACTAGTTCTTGCACAAGCAGAAAAATGGACTGTACAAGCTATTTGTCTCCAAAGGATATCTTGGAAGGCTCTCCAAATCTCAATCTTGCCTTTGTTGCTCATCTTTTCCATAAAAGGAGTGGATTATCATTGGATCCAAACAAGGTATCATTTGCAGAGATGATGGAAGACG_-_ATGTGCAAGTTTCTAGGGAAGAAAGAGCTTTCCGCTTATGGATCAATAGTCTTGGTATTGACACATTTGTCAACAATCTTTTTTGAAGATGTTAGGAATGGATGGGTTCTGCTTGAAGTACTTGACAAAGTGGCCCCAGGGATGGTAAATTGGAAGCAAGCAAGCAAGCCTCCAATAAAAATGCCATTCAGGAAAGTAGAAAATTGTAATCAAGTAATCAGAATTGGAAAGCAACTGAAATTTTCACTTGTTAATGTGGCTGGGAATGACATTGTGCAAGGAAATAAAAAGCTCATTCTTGCATATTTGTGGCAATTGATGCGGTACAACATGCTTCAGCTGCTCAGAAATCTCAGGCTGCGTTCTAGTCATAAGGAGATATCGGATCTTGAGATAATGAATTGGGCAAATGCAAAAGTTAAAAATACAGGCAGAGCTTCTCAAATGGAGAGCTTCAGGGACAAAAGTCTTGCAAATGGAATATTTCTCCTTGAATTACTGAGTGCTGTGGAACCTAGGGTTGTGAACTGGTATATTGTCACAAAAGGCGAGAATGAGGAAGAAAAGAGACTGAATGCAACCTATATAATCAGTGTGGCAAGGAAGCTTGGTTGCTCAGTTTTCCTTCTACCTGAAGACATTGTTGAGGTTAATCCTAAAATGATACTGATATTGGTTGCAAGCATTATGCTTTGGAGTCTTACAAAACAAACCAGTGAAGATGTGGGAATTTCAGACAGTGAAAATGGAAGTGTAACCGGCAGTCTATCAAATCTTGCCCTTGATGATAGTACTTCAGAGGCTTCTTTGCCACTTGATAATGGAAGTGAATCGGCAAGTGAACATTCCTTTGAGGAGAGTAGAGCAGAGTAG___AGGTGATTAATGTTTAATTGATTTTGCTTTCGCCAAAAATGTTTCAAATTTTTTTGACTACAAATCATAAAGCTTGGCCATGGTTCTGGGCCTTGCTTGGAAAAACACACTACCCGGTAAGATATTTTTGTACCAATATTTGGAATCTCACATGGACTATGTAATCTAGTTCCAAAGAGTTCAACAAAATGTGTTTGAATTCCACAAAAGAAAAGGGAAATTCACTCAACTTTTGTAAAGTAACATGATCATCTTGCTGATCATTTTGCATATCGTTCAAGGCTGATTCTTATCACCACTAGGAGCCAGCAGATGATTAATGAGCACAGTAGTGAGTAAGGTGTAACTCATCTGGATATTGAACGATCCATAGTATTAATTGCTTTTTAAAC

Fln Alignment:

sp_v1.1_unigene6195___MESFRDKSLANGIFLLELLSAVEPRVVNWYIVTKGENEEEKRLNATYIISVARKLGCSVFLLPEDIVEVNPKMILILVASIMLWSLTKQTSEDVGI--SDSENGSVTGSLSNLALDDSTSEASLPLDNG
D5A879______________MGSFKDKSLTNGIFFLELLTAVEPRVVSWNVVTKGETEQEKKLNATYIISVARKMGCSIFLLPEDIVEVNPKMILTLTASIMLWSLSNQTGEDTSTMSSELENGLASASISSVD-NDSASQASLPPDNG

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
420	83	16			0.994512
423		16		83	0.994512
425		16		83	0.994512
426	16	83			0.994512
802	14		85		0.993533
813	87		12		0.992554
814		87	12		0.992554
818	87	12			0.992554
820		12	87		0.992554
821	87			12	0.992554
846		11	88		0.923564
847	88		11		0.923564
849	88	11			0.923564
850		88	11		0.923564
854		11		88	0.923564
855	88	11			0.923564
860		11		88	0.923564
865	88	11			0.923564
866			88	11	0.923564
939	90		10		0.90298
946	90			10	0.90298
952	10			90	0.90298
953	10	90			0.90298
987			18	81	0.999994
991			18	81	0.999994
994	18	81			0.999994
1001	81		18		0.999994
1002		18		81	0.999994
1003	81			18	0.999994
1004	81		18		0.999994
1006		8	75		0.99999
1007		16	83		0.999991
1009	75	25			1.0
1010			83	16	0.999991
1011	16			83	0.999991
1421	75	25			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
335	350	AAGC AAGC AAGC AAGC	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain