SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6186

Length: 2548 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6186
ATTTGGGGGAGGCATTATACAAATACCTTTGCTTTAAATCACATTTTCCCAAGAAACGGAGACGAGGTGGGGCGTTCGGCTGTTTTGAGTGGAAAGCCGAATCCCCATCCATCCCAAAATTGGAGAAATTCTTCCAACCTGGAGAGGCCAATTTGTAAATCGACTGTTCATCCCACGGCCTCTATAGCTTACTTGCAGCTCAGGAAACTGTGCTGGATTCAACTACTCTACTGAAGGATCAGGGCTTATTTGTGCAATACTTGCAGGTTTGTTATACTGAGTATAATGTTCTATATTCAAAAGTTCTAGTGTTGTTATTTCTCTTGGAAAGACATGTCAGAAGGTGGAAAGAAATACTAGATGGGGCTCAATAGATTGGCCACAGCATATGCGGTGATTTCCCGACATTTCTTAGCATCTCCACCAACTTCGGGATTTTCACACTCATCTAGTCCATTACCACTCTCTAGTCCCCCTTCTGATATGAAACAGGTAGACTATGGAATAACATGTGACCTGCATCATTCATCCCCTCTTCCAGAGTTGTCAAGCATCTCCAGTAAAACTGATTTAGAACCAGGAATTCATTCAAGGTTGGTTCAGACAAAGTATTCATCTTTGAATCTGCAAAAGGATAAACTTTCAAAGGAAAATGTGCTTTTCTCCATATTCTCTCCAAATGGAAGGTGGATAAAAGTAGCTGCAGGGTTTTTATTTCTTTTCCTATTTTTAAGTGTTGTTTGTTTAGGATCTGGGTGGAAAAGCTCTTTCTGGGCACTAGAGCCATCACACTTCACAATAATTTTGGATTGTGGAAGCACAGGTACTCGAGTTCATGTGTATGAGTGGTCACATGATAGTAGGAAGGTTCAAGAAAATCTTCCAGTAGTGGTGCATTCAATATCTGGAGAATCTGCTAAAATTTATGGTCATGAGAATGGCCTTGCATATCTCAGGGTGCAAACTGAGCCTGGACTTGATAAATTTCTGTACAATGAATCTGGATTGAGGGTTTCCATAGAGCCTCTTCTGAATTGGGCAGAGAAACATATACCTTCTTATGCACATAGAACGACTCCTGTTTTCCTTCTGGCTACAGCTGGCCTCCGCAAGCTGCCAATTTCTGATGCAAAGTGGATTTTGGACAAGACATGGGAAATATTGGTGTCATATCCATTTAGGTGTCAGAGGAGCTGGGTAAGGGTTATTAGTGGGGTAGAAGAGGCCTATTATGGATGGGTGGCTCTTAATTACAACATGGATATGCTAGGTAAAACACATGGGCACAAAACTTTTGGTGCACTTGACTTGGGTGGTTCCTCAATGGAAGTTACCTTTGAACCTGGGGAAGAGACAAAAGGTGAATATGCTGTGAAATTGAACATTGGGTCAGTGGAGCACCAACTTTATGCATATTCACTTCCAGCTTATGGTTTGAATGATGCCTTTGAGAAGTCAGTCATACTCCTACACAAGAAGCTTTCAGAGAGGAGCAACGAAGAACTGCACTATTCCAACAATCAAATGAATTTGCAGATAAAACATCCGTGTTTGCAAGCTGGCTACAGACAATCATATCATTGTTCTAAATGTTATCCACATCAACCTGGAAGTCTTCAAAATGATAGGAGGATGACAAGGAAAGAAATTTCTGGAACAGAGATTGAGTTGGTTGGTGACTCTGACTGGGCAGAATGCCAAGCACTGGCTAAATCCACTGTTAATGCCTCTTTATGGTCACATTCACATGTAGCTACAAATTGTGAGCAGTACCCTTGTGCCCTTAAAAAGCATCCAACACCACATGGGAGTTTTTATGCACTGTCTGGATTCTTTTTTGTCTACAAATTTTATAATCTGTCTTCTGTTGCCACCTATCATGAGATATTAGAGAAAGGTGAGCATTTCTGTTCAAAAACATGGAAAGATGCTCAGAAAAGTGTAGTTCCACAGCCATTTGTAGAAGAGTACTGTTTTCGTGCAGCATATGTAGTAGCGCTCCTTACAGATGGGTTGCATTTAAAAGATGAGCAAATAACTGTTGGATCTGGGAGCATAACGTGGACATTGGGCGTGGCTTTTCTAGAAGCTACAAAATCTTTGTCAACTGATGAGAGTTTGGGAAGCCAACACTGGCCTATTCCTGACATAAGATATTTTGGGAATTTTAAACTAGATGCAGTAACATGTACAATTTTTCTCTTCATTCTTTTGTTGCTTTGTATATTTGTTGTCTCATACATCCATAGATTTATTCCACAATCATGGCCAAAATGTCATTTGCCCCTTTTTGAGCCATACAGTGCAAACATTGGGGCTGCCATCAAGGTTCCATGAACTTTATGTTATCCAATACAGAATCCTATTAGTAATGGAGTATTTGTAGTTTAGTCAGGCAAATTCATGCTTTGCAGTTTCTTGTATGCAACACTTGAATGCGAGCATATAGAACTTTTAGTCTGCGATCAGGAATAAAGGATTGGTAGGAGTAAAGAAATTTTACTCTTTATTTACATGAGCTATTTACATAGTTTTTCTTCATAGTAAC

Ace file of the UniGene sp_v1.1_unigene6186

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoside phosphatase family protein n=2 Tax=Arabidopsis RepID=D7MGU2_ARALY	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	protein	-	-	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nucleoside phosphatase GDA1/CD39	IPR000407	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P214

Fln msg: your sequence is longer than subject: 659 - 171

Fln protein: MGLNRLATAYAVISRHFLASPPTSGFSHSSSPLPLSSPPSDMKQVDYGITCDLHHSSPLPELSSISSKTDLEPGIHSRLVQTKYSSLNLQKDKLSKENVLFSIFSPNGRWIKVAAGFLFLFLFLSVVCLGSGWKSSFWALEPSHFTIILDCGSTGTRVHVYEWSHDSRKVQENLPVVVHSISGESAKIYGHENGLAYLRVQTEPGLDKFLYNESGLRVSIEPLLNWAEKHIPSYAHRTTPVFLLATAGLRKLPISDAKWILDKTWEILVSYPFRCQRSWVRVISGVEEAYYGWVALNYNMDMLGKTHGHKTFGALDLGGSSMEVTFEPGEETKGEYAVKLNIGSVEHQLYAYSLPAYGLNDAFEKSVILLHKKLSERSNEELHYSNNQMNLQIKHPCLQAGYRQSYHCSKCYPHQPGSLQNDRRMTRKEISGTEIELVGDSDWAECQALAKSTVNASLWSHSHVATNCEQYPCALKKHPTPHGSFYALSGFFFVYKFYNLSSVATYHEILEKGEHFCSKTWKDAQKSVVPQPFVEEYCFRAAYVVALLTDGLHLKDEQITVGSGSITWTLGVAFLEATKSLSTDESLGSQHWPIPDIRYFGNFKLDAVTCTIFLFILLLLCIFVVSYIHRFIPQSWPKCHLPLFEPYSANIGAAIKVP*

Protein Length: 660

Fln nts: ATTTGGGGGAGGCATTATACAAATACCTTTGCTTTAAATCACATTTTCCCAAGAAACGGAGACGAGGTGGGGCGTTCGGCTGTTTTGAGTGGAAAGCCGAATCCCCATCCATCCCAAAATTGGAGAAATTCTTCCAACCTGGAGAGGCCAATTTGTAAATCGACTGTTCATCCCACGGCCTCTATAGCTTACTTGCAGCTCAGGAAACTGTGCTGGATTCAACTACTCTACTGAAGGATCAGGGCTTATTTGTGCAATACTTGCAGGTTTGTTATACTGAGTATAATGTTCTATATTCAAAAGTTCTAGTGTTGTTATTTCTCTTGGAAAGACATGTCAGAAGGTGGAAAGAAATACTAG_-_ATGGGGCTCAATAGATTGGCCACAGCATATGCGGTGATTTCCCGACATTTCTTAGCATCTCCACCAACTTCGGGATTTTCACACTCATCTAGTCCATTACCACTCTCTAGTCCCCCTTCTGATATGAAACAGGTAGACTATGGAATAACATGTGACCTGCATCATTCATCCCCTCTTCCAGAGTTGTCAAGCATCTCCAGTAAAACTGATTTAGAACCAGGAATTCATTCAAGGTTGGTTCAGACAAAGTATTCATCTTTGAATCTGCAAAAGGATAAACTTTCAAAGGAAAATGTGCTTTTCTCCATATTCTCTCCAAATGGAAGGTGGATAAAAGTAGCTGCAGGGTTTTTATTTCTTTTCCTATTTTTAAGTGTTGTTTGTTTAGGATCTGGGTGGAAAAGCTCTTTCTGGGCACTAGAGCCATCACACTTCACAATAATTTTGGATTGTGGAAGCACAGGTACTCGAGTTCATGTGTATGAGTGGTCACATGATAGTAGGAAGGTTCAAGAAAATCTTCCAGTAGTGGTGCATTCAATATCTGGAGAATCTGCTAAAATTTATGGTCATGAGAATGGCCTTGCATATCTCAGGGTGCAAACTGAGCCTGGACTTGATAAATTTCTGTACAATGAATCTGGATTGAGGGTTTCCATAGAGCCTCTTCTGAATTGGGCAGAGAAACATATACCTTCTTATGCACATAGAACGACTCCTGTTTTCCTTCTGGCTACAGCTGGCCTCCGCAAGCTGCCAATTTCTGATGCAAAGTGGATTTTGGACAAGACATGGGAAATATTGGTGTCATATCCATTTAGGTGTCAGAGGAGCTGGGTAAGGGTTATTAGTGGGGTAGAAGAGGCCTATTATGGATGGGTGGCTCTTAATTACAACATGGATATGCTAGGTAAAACACATGGGCACAAAACTTTTGGTGCACTTGACTTGGGTGGTTCCTCAATGGAAGTTACCTTTGAACCTGGGGAAGAGACAAAAGGTGAATATGCTGTGAAATTGAACATTGGGTCAGTGGAGCACCAACTTTATGCATATTCACTTCCAGCTTATGGTTTGAATGATGCCTTTGAGAAGTCAGTCATACTCCTACACAAGAAGCTTTCAGAGAGGAGCAACGAAGAACTGCACTATTCCAACAATCAAATGAATTTGCAGATAAAACATCCGTGTTTGCAAGCTGGCTACAGACAATCATATCATTGTTCTAAATGTTATCCACATCAACCTGGAAGTCTTCAAAATGATAGGAGGATGACAAGGAAAGAAATTTCTGGAACAGAGATTGAGTTGGTTGGTGACTCTGACTGGGCAGAATGCCAAGCACTGGCTAAATCCACTGTTAATGCCTCTTTATGGTCACATTCACATGTAGCTACAAATTGTGAGCAGTACCCTTGTGCCCTTAAAAAGCATCCAACACCACATGGGAGTTTTTATGCACTGTCTGGATTCTTTTTTGTCTACAAATTTTATAATCTGTCTTCTGTTGCCACCTATCATGAGATATTAGAGAAAGGTGAGCATTTCTGTTCAAAAACATGGAAAGATGCTCAGAAAAGTGTAGTTCCACAGCCATTTGTAGAAGAGTACTGTTTTCGTGCAGCATATGTAGTAGCGCTCCTTACAGATGGGTTGCATTTAAAAGATGAGCAAATAACTGTTGGATCTGGGAGCATAACGTGGACATTGGGCGTGGCTTTTCTAGAAGCTACAAAATCTTTGTCAACTGATGAGAGTTTGGGAAGCCAACACTGGCCTATTCCTGACATAAGATATTTTGGGAATTTTAAACTAGATGCAGTAACATGTACAATTTTTCTCTTCATTCTTTTGTTGCTTTGTATATTTGTTGTCTCATACATCCATAGATTTATTCCACAATCATGGCCAAAATGTCATTTGCCCCTTTTTGAGCCATACAGTGCAAACATTGGGGCTGCCATCAAGGTTCCATGA___ACTTTATGTTATCCAATACAGAATCCTATTAGTAATGGAGTATTTGTAGTTTAGTCAGGCAAATTCATGCTTTGCAGTTTCTTGTATGCAACACTTGAATGCGAGCATATAGAACTTTTAGTCTGCGATCAGGAATAAAGGATTGGTAGGAGTAAAGAAATTTTACTCTTTATTTACATGAGCTATTTACATAGTTTTTCTTCATAGTAAC

Fln Alignment:

sp_v1.1_unigene6186___FTIILDCGSTGTRVHVYEWSHDSRKVQENLPVVVHSISGESAKIYGHENGLAYLRVQTEPGLDKFLYNESGLRVSIEPLLNWAEKHIPSYAHRTTPVFLLATAGLRKLPISDAKWILDKTWEILV-SYPFRCQRSWVRVISGVEEAYYGWV
A9P214______________YAVVFDAGSTGSRVHVYCFGDN----MELIPI--NGVGIEFAK-------------KVKPGLSAYADNPEEAANSLKELLQSAVEVVPEAARPVTPVRLGATAGLRQISEVKADKILAAVRKLFSHNTTFKFEEGWVSLLEGNQEGAFMWV

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
781	75			25	0.996473
830	75			25	1.0
831		75	25		1.0
833		87	12		0.992554
834			62	12	1.0
835	87	12			0.992554
836	12	25	62		1.0
837		12		87	0.992554
1154	75		25		0.996473
1193	75			25	0.996473
1197		25	75		0.996473
1200	25		50	25	0.995533
1205	75		25		0.996473
1206	75			25	0.996473
1207		25	75		0.996473
1208	25		75		0.996473
1209		25	75		0.996473
1211		25		75	0.996473
1341		80		20	0.995493
1416	33			66	0.997452
1524		75		25	0.996473
1708		80		20	0.995493
1740		83		16	0.994512
1926	90		10		0.90298
1930	87			12	0.992554
1934	87	12			0.992554
1935	87			12	0.992554
1938	87			12	0.992554
1939		12		87	0.992554
1940	12		87		0.992554
1946	77			11	0.968132
1947	88		11		0.923564
1949	88	11			0.923564
1950		11	88		0.923564
1954	88		11		0.923564
1957			12	87	0.992554
1958		87		12	0.992554
1962	87			12	0.992554
1965	12	87			0.992554
1976	12		87		0.992554
1980	87		12		0.992554
2035	87			12	0.992554
2037	87		12		0.992554
2038			12	87	0.992554
2147		83	16		0.994512
2486	85		14		0.993533
2488			83	16	0.994512
2490			16	83	0.994512
2521	25			75	0.996473
2526	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain