SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6158

Length: 1475 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6158

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ribosomal protein S15A (Rps15a); K02957 small subunit ribosomal protein S15Ae	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	protein	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	96%
Blast2go	cell wall	GO:0005618	Cellular Component	96%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	96%
Blast2go	mitochondrion	GO:0005739	Cellular Component	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN71

Fln msg:

Fln protein: MVRISVLNDALRSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVELNGRLNKCGVISPRFNIGVKEIESWTARLLPSRQFGFIVLTTSAGIMDHDEARRKNAGGKILGFFY*

Protein Length: 132

Fln nts: ATGGGGGTTTTTCTCCTCCTCGCCCATCCTCATGGCCATTGTGAGAAGATCCATGGTTGGCCGCACATCAAGCAGGTGAGCGTAAAGCGTGCACAACCGTGTATGAGTCTGAAAGAGTCTACGTGAAACCACATCAAGATTTGTGCATGGCCACCTTATGTGCTTAGAAATCTAATTTGTGTTTTTTTTTCACAGATGTAATATAAACCCTAATCGTAGCTTCCTGTGGCTGCTCCAAACCCTAATCAAGGACTATAGATTTTTCTCCTTACTTCCAACCCTAAATCGGAAACCCTAAATCCATCGGTGGTTTTATCTGCTCCTGACATTTTACCTCTCGCTCTTGTTCAAGCGTTTTTACCCCAGTTTGTGATCTGGATGCGTACTTGCGCAAATTTTGGACTCCCGGAGACGCGAGGATTAAGTAAGTCACA_-_ATGGTTAGGATTAGTGTTTTGAATGATGCTCTCAGGAGCATGTATAATGCAGAAAAGCGTGGAAAGCGGCAAGTGATGATCAGGCCATCATCGAAAGTTATCATCAAGTTCCTCCAAGTCATGCAAAAGCATGGTTATATTGGAGAGTTTGAGCTAGTTGATGATCATAGAGCAGGTAAAATTGTTGTAGAGCTAAATGGAAGGCTCAACAAGTGTGGAGTAATCAGTCCTCGTTTTAATATTGGGGTGAAAGAAATAGAGTCGTGGACTGCTCGCTTGCTTCCTTCTAGACAGTTTGGTTTCATTGTTCTCACAACATCTGCTGGGATCATGGATCATGATGAAGCCAGGAGAAAGAATGCAGGTGGAAAAATCTTAGGATTTTTCTATTAG___AGATATCGTAATTAGGCATTGGTGCCATAAATGAAGAATATATAATCCAACATTATCTCCTAAAGCCTCGTTGAGTTTTCCAACCTGTCATTGTCTTTATATTCAAGACAAACATCATTTTTGAGGTGTATCGTGATTGGTTTCTTGTACTTTCACTATAGTGTACCATGTATTGTTTCCTTTTTATCCAGTCAGTTGCAAGTGGTATGCAGTGCAAATTTTTAAATCTGCCAAATGAGGTAAAAGAACGTATATAGTACTTTCATTTGGAAAGTTCAAATCTGGTGGAGCTTACGTTTAGCTCTTCATGTAGCTTCCATGGAATTCGCAAAGGATAATAAATAACTTAAAAGTTGATAATGCATTTATTGAAAGGTTCAATGACATGGACAGTGCCAATAGTTAAGATGGCCCTATAGTTGGGAGCAACGGATTATCTTTTTTTCTAGGAGTCATTAGGTTTGTCTCCCAGTATGGCATGTTTAAAGCATGAGAGCAGTTTAGAGATGAAGTGGTGTATTGAGGAATATCCATATTTGAGAGAACCAGAACAAACTATTGTTGTTATTCTAATGATTACAGCGTGATCTTGATGCTTATCAAAGTCAACATCGTAAACAATGACAGATGATGACTTGTTGTTCTCTT

Fln Alignment:

sp_v1.1_unigene6158___MVRISVLNDALRSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVELNGRLNKCGVISPRFNIGVKEIESWTARLLPSRQFGFIVLTTSAGIMDHDEARRKNAGGKILGFFY
A9NN71______________MVRISVLNDALRSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVELNGRLNKCGVISPRFNIGVKEIESWTARLLPSRQFGFIVLTTSAGIMDHDEARRKNAGGKILGFFY

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
298	77			22	0.999999
299	77		22		0.999999
300			22	77	0.999999
301		77	22		0.999999
302		77	22		0.999999
337	7	69	23		1.0
338			23	76	1.0
339		69	30		1.0
727	88			11	0.923564
729			22	77	0.999999
730		11	11	77	0.968132
733		12	87		0.992554
734	12			87	0.992554
735		12		87	0.992554
963	88	11			0.999952
964			11	88	0.999952
966		11	88		0.999952
969	11			88	0.999952
970		11		88	0.999952
976	87		12		0.999964
979			12	87	0.999964
985	87	12			0.999964
986	12			87	0.999964
1128			96	3	0.993591
1164	60			39	1.0
1377			40	60	1.0
1384		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain