SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6139

Length: 1219 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6139

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GR-RBP3 (glycine-rich RNA-binding protein 3); ATP binding / RNA binding	-	-	1.0e-32	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	at5g61030 maf19_30	-	-	0.0	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	copper ion binding	GO:0005507	Molecular Function	0.0	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	81%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ72

Fln msg:

Fln protein: MSFASKVGGLLRQSISGRLGFNETRSVPSIYHALRYMSSSRLFIGGISYGMDDQSLRESFTEYGEVIEARIIHDRETGRSRGFGFVSFTSNEEAAAAIAAMDGKDLHGRLVHVNYATERTGGFRSGGGGYGGGGYSQNDGYGTGSGGGGGYSQNDGYGTGSGGYSQNDGYGTGGGYGQNDGNASGGSYSQSQSDGYGTSGAGYDGTSEGRSTGGTKDDFGYDDKVGNMDKGY*

Protein Length: 234

Fln nts: ATGGGGAGTCTAAAGCGTTGCATCAACGGCCAGGACTAATCCTATCGGACGGGGTTTATTCATCTCTGTTCCAGATCGACGTTCAGGAGGGTTGCTGGATTTATGGGCATTTGGATATTTGCAGGGTCTATTTAACGTCGTGACCTCGAAAAGCACTCAGGGTTTAAGCATATATTGTCTTCGGCCCTATTGCAATCATCTTCAGCACAAGGGAAAAAAGCTTGCTGGGTATAGTAGTTATATCAAACA_-_ATGTCCTTTGCAAGCAAAGTTGGAGGCCTCTTACGGCAAAGTATCTCTGGCCGTCTGGGCTTTAATGAAACTAGATCAGTGCCATCTATCTACCATGCTTTGAGATACATGTCCTCGTCAAGGCTTTTTATTGGAGGTATATCTTACGGCATGGATGACCAATCTCTAAGAGAGTCATTCACTGAATATGGTGAAGTCATTGAAGCGAGAATCATTCATGACCGGGAGACTGGTCGGTCAAGAGGCTTCGGTTTTGTTAGTTTCACTTCTAACGAGGAGGCTGCAGCCGCCATAGCAGCCATGGATGGAAAGGATCTTCATGGACGTCTTGTTCATGTTAACTATGCTACTGAAAGAACTGGAGGTTTTCGTTCTGGTGGTGGTGGTTATGGTGGTGGTGGCTACAGTCAGAATGATGGATACGGAACTGGTAGTGGTGGTGGTGGTGGCTACAGTCAGAATGATGGATACGGAACTGGTAGTGGTGGCTACAGTCAGAATGATGGGTATGGAACTGGTGGTGGCTACGGTCAGAACGATGGGAATGCAAGTGGTGGTAGCTACAGTCAGAGTCAGAGTGATGGGTATGGGACCAGCGGTGCTGGGTATGATGGAACATCTGAGGGTAGAAGCACAGGCGGAACTAAAGATGATTTTGGCTATGATGATAAAGTTGGCAATATGGACAAGGGATACTAG___GCCATTCTTTCTTGAACATTTTTTGCATCGAATTGAGTTGAGTGACATCACTCCTCTAATCAGGCCTGACGTCTTGTAGAGTTTCGTTTATTGAACTGCCATATTTGTTCATGCAGTTTTAGCTCTATTATATGCATCTTGATGCTTAAATATTATGAATCAGCATGCAGCATATTGCACTTACGATTGTTTTCATTTCTAGCGTAATTAATGTATACTAAATTTTGTTACAGAAGGTAAACTGTTTCGTTCTCAAAATAACATTTTTCAA

Fln Alignment:

sp_v1.1_unigene6139___MSFASKVGGLLRQSISGRLGFNETRSVPSIYHALRYMSSSRLFIGGISYGMDDQSLRESFTEYGEVIEARIIHDRETGRSRGFGFVSFTSNEEXXXXXXXMDGKDLHGRLVHVNYATERT
A9NZ72______________MSFASKVGSLLRQGISGRLGFNETRSVPSIYHALRYMSSSRLFIGGLSYGMDDQSLRESFTEYGEVIEARIIHDRETGRSRGFGFISFTSNEEAAAAITGMDGKDLHGRLVHVNYATERT

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
89			80	20	0.995493
91	80		20		0.995493
130			20	80	0.995493
142		25		75	0.996473
146	25		75		0.996473
147		25		75	0.996473
148		25		75	0.996473
150		75		25	0.996473
152	75		25		0.996473
153	75	25			0.996473
154	75			25	0.996473
155	75		25		0.996473
156			75	25	0.996473
157		25	75		0.996473
158	25		75		0.996473
159		25		75	0.996473
161		25		75	0.996473
162	25			75	0.996473
371		5		94	0.997984
689	11		88		0.999952
961		6		93	1.0
1135	94	5			0.999996
1204	12	87			0.999964
1221		37		62	1.0

SSRs (tot: 3)

Start position	End position	Sequence	Length
624	636	TGG TGG TGG TGG T	13
639	650	TGG TGG TGG TGG	12
683	698	GTG GTG GTG GTG GTG G	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain