SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6117

Length: 438 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6117
AACAAACTTTTCCTGTAGGCTTATTTCTAAAAGCAAATTCACACCGTATTGACTTTTCTAGACTGGGTGGGGCTTTTAGTCATCTTCTTAAAACTCATCCTATTGCCGGTGAAGATTTTGAAGAAATCACATGGAATGAAGGTGACATGAATGTTGAAGAGAGTAATGTCACACATTCTACAAGGCAAAAACCCTGTTGCTGTTCAGGTGCAGATGCATCTCTTTCGAGCAGTGGGAAGAATCTTGTGAAATTTGTCAACAGGTGTTCCAGTAGTCATGGCAATGCTATTCCAGAAAGGTCAACAAATGTTAGCACAGAATGTACTTCAAGTAGCTACAGCAATGAGATAGTAGATAAACCCAGTTCAAGTGAGCAGAGATATCAACCAATTCAACAGCAGAAAAATGCTGGATCAAGGTCGACTCAAGTGTTATCTG

Ace file of the UniGene sp_v1.1_unigene6117

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SRQ3_RICCO	-	-	9.0e-33	48%
FL-Next	sp=E3 ubiquitin-protein ligase RKP; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	43%
Blast2go	protein	-	-	1.62656e-32	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	1.62656e-32	61%
Blast2go	response to virus	GO:0009615	Biological Process	1.62656e-32	61%
Blast2go	proteolysis involved in cellular protein catabolic process	GO:0051603	Biological Process	1.62656e-32	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SIZ8

Fln msg: Distance to subject end: 541 aas, your sequence is shorter than subject: 145 - 1280

Fln protein: QTFPVGLFLKANSHRIDFSRLGGAFSHLLKTHPIAGEDFEEITWNEGDMNVEESNVTHSTRQKPCCCSGADASLSSSGKNLVKFVNRCSSSHGNAIPERSTNVSTECTSSSYSNEIVDKPSSSEQRYQPIQQQKNAGSRSTQVLS

Protein Length: 146

Fln nts: AACAAACTTTTCCTGTAGGCTTATTTCTAAAAGCAAATTCACACCGTATTGACTTTTCTAGACTGGGTGGGGCTTTTAGTCATCTTCTTAAAACTCATCCTATTGCCGGTGAAGATTTTGAAGAAATCACATGGAATGAAGGTGACATGAATGTTGAAGAGAGTAATGTCACACATTCTACAAGGCAAAAACCCTGTTGCTGTTCAGGTGCAGATGCATCTCTTTCGAGCAGTGGGAAGAATCTTGTGAAATTTGTCAACAGGTGTTCCAGTAGTCATGGCAATGCTATTCCAGAAAGGTCAACAAATGTTAGCACAGAATGTACTTCAAGTAGCTACAGCAATGAGATAGTAGATAAACCCAGTTCAAGTGAGCAGAGATATCAACCAATTCAACAGCAGAAAAATGCTGGATCAAGGTCGACTCAAGTGTTATCTG

Fln Alignment:

sp_v1.1_unigene6117___QTFPVGLFLKANSHRIDFSRLGGAFSHLLKTHPIAGEDFEEITWNEGDMNVEESNVTHSTRQKPCCCSGADASLSSSGKNLVKFVNRCSSSHGNAIPERSTNVSTECTSSSYSNEIVDKPSSSEQR-----YQPIQQQKNA
Q9SIZ8______________QKFPLSLFLKNDPHRADITRLGGLFSHISKSYPTDDQEEEIMRWEEGCMDDEQNRVTHATEQKPCCCLAYDTDLTKSLKDRGKNTAQSSRGRCSSIPERSSHVAAECSAGSFSEEIDDKPSTSNQSDPDFGYRPVRFMRTA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
109	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain