SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6108

Length: 1107 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6108

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin-associated (UBA)/TS-N domain-containing protein	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	ubiquitin-associated ts-n domain-containing protein	-	-	71%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	71%
Blast2go	UBA-like	IPR009060	-	71%
Blast2go	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	71%
Blast2go	Peptidase S54, rhomboid domain	IPR022764	-	71%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVQ2

Fln msg: STOP codon was not found. Distance to subject end: 7 aas,

Fln protein: MNNGPSGFQNAPVTKGFVITSAIFSIVIGMQDGASACGLSYQGIVRKLHLWRLVTSALVFSSTPELIFGLCLLYYFRVFERQIGSNKYSVFVLFSVIFTTFFELISLVVFKDPISIGLTPGPYGLIFSSFIPFYFDIPVSTWFRIFGIQFSDKSFVYLAGLQLLISSRKRSFIPGLCGIIAGLSYRLNVFGVRRIKFPEQLASAVSRLSLSTLLMGLSNTSSRENVTREAVTSYDTEFEDEFAAANPLLHVTIDPSEEAVSTLVAMGFDRNLAIEALAQADNDISTATN

Protein Length: 290

Fln nts: ATGGGGATAATTAACCTATAACTTCACAAGTCCTTAGAGGAAACAAACATAAGAGCTGAAAGTGGAGAGAGTTAAGGACTCTACACTCGAGTGAAGGCGGGTAGAGATCATTTGACGGTGCTGACAGTAAGTATCGCGTTATTCAAGTAAAGTTGGATCTGATCAAAATATTGGAAGAGGAGTGTTTTCTTGTCTTTGCACAAAATCTAAGAGCGGTGTCGAATTTTCAAATTACAAA_-_ATGAACAACGGACCCTCTGGATTTCAAAATGCTCCGGTCACCAAGGGTTTCGTAATTACATCTGCCATTTTTTCTATAGTAATTGGTATGCAAGATGGGGCATCGGCCTGCGGTCTTTCTTACCAGGGAATTGTACGGAAGCTTCACCTTTGGAGGTTGGTCACATCTGCACTTGTGTTTTCATCCACCCCAGAGTTGATATTTGGGCTTTGCCTCTTGTATTATTTCAGGGTATTTGAGAGACAAATTGGGTCTAACAAATATTCAGTGTTTGTCTTATTTTCAGTCATTTTCACAACTTTCTTCGAACTGATTTCTTTGGTAGTATTCAAAGATCCGATTTCAATTGGACTAACCCCTGGACCCTATGGCTTGATATTTTCCTCATTTATACCTTTCTATTTCGATATACCAGTTTCAACATGGTTTCGTATTTTTGGGATCCAATTCTCTGACAAATCATTTGTCTACCTTGCTGGTCTTCAGCTACTTATTTCATCACGGAAAAGATCATTTATACCAGGTCTTTGTGGCATCATCGCTGGCTTGTCTTATCGACTGAATGTCTTTGGGGTTCGCAGAATTAAGTTCCCTGAGCAATTAGCTTCTGCTGTTTCTCGCCTTTCCTTGTCGACTTTGTTAATGGGGCTATCTAACACTTCTTCAAGAGAGAATGTTACAAGGGAGGCTGTTACTTCATATGACACGGAATTTGAGGATGAGTTTGCTGCTGCAAATCCACTTCTTCATGTAACTATAGATCCATCTGAAGAAGCTGTTTCCACATTGGTTGCAATGGGCTTTGATAGAAATCTCGCAATTGAAGCACTAGCCCAGGCAGATAATGATATTAGCACAGCAACAAATTT

Fln Alignment:

sp_v1.1_unigene6108___MNNGPSGFQNAPVTKGFVITSAIFSIVIGMQDGASACGLSYQGIVRKLHLWRLVTSALVFSSTPELIFGLCLLYYFRVFERQIGSNKYSVFVLFSVIFTTFFELISLVVFKDPISIGLTPGPYGLIFSSFIPFYFDIPVSTWFRIFGIQFSDKSFVYLAGLQLLISSRKRSFIPGLCGIIAGLSYRLNVFGVRRIKFPEQLASAVSRLSLSTLLMGLSNTSSRENVTREAVTSYDTEFEDEFAAANPLLHVTIDPSEEAVSTLVAMGFDRNLAIEALAQADNDISTATN
A9NVQ2______________MNNGPAGFQNAPVTKGLIITSAIFSIVIGMQHGASACSLSYQGIVRKLHLWRLVTSAFVFSSTPELMFGLCLLYYFRVFERQIGSNKYSVFVLFSVIFTTFFELISLVVFK---------------------------VSTWFRIFGIQFSDKSFVYLAGLQLLISSRKRSFIPGICGIIAGLSYRLNVFGIRRIKFPEQIASAVSRFSLPTMLMGLSSTSSRENVTREAVTSYDTEFEDEFAAATPLLRVTIDPSEEAVSTLVAMGFDRNLAIEALAQADNDISAATN

SNPs (tot: 62)

Position	A %	C %	G %	T %	Probability
172	75		25		0.996473
173	75			25	0.996473
174	75		25		0.996473
176		25		75	0.996473
177	75	25			0.996473
183	75	25			0.996473
184	75			25	0.996473
186	75			25	0.996473
187		25	75		0.996473
190		25	75		0.996473
192		25	75		0.996473
193	25			75	0.996473
229		75		25	0.996473
273	83		16		0.994512
274	83			16	0.994512
275	83	16			0.994512
276	66		16		0.988813
279	16	83			0.994512
280		16		83	0.994512
282		83		16	0.994512
283			83	16	0.994512
285			16	83	0.994512
287	83			16	0.994512
288		83	16		0.994512
289		83		16	0.994512
290	83	16			0.994512
292		16	83		0.994512
293			83	16	0.994512
294		16	83		0.994512
295	16			83	0.994512
301	85	14			0.993533
302	85		14		0.993533
304			14	85	0.993533
307	85	14			0.993533
312		85	14		0.993533
314	85			14	0.993533
315			14	85	0.993533
317		14		85	0.993533
318	14			85	0.993533
319		14		85	0.993533
332		12	87		0.992554
335	87		12		0.992554
341		12	87		0.992554
342	87	12			0.992554
344			87	12	0.992554
353			87	12	0.992554
358		12	87		0.992554
359	12	87			0.992554
413	62		37		1.0
458			10	90	0.90298
460		10	90		0.90298
641	85			14	0.993533
718	85		14		0.993533
764		15		84	0.999986
765	84		15		0.999986
769		84	15		0.999986
770	84			15	0.999986
772	15		84		0.999986
773		15		84	0.999986
777			15	84	0.999986
781			84	15	0.999986
1091		12		87	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain