SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6081

Length: 2367 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6081
GGTGCATGGCCATTGATATACCTGTAATGTGAAGGGTTTTATTGACGGCTGAGTTCTTTTAAGGAGCCTTCTGTCTGCTTTTACTCGGTCTGTGGTTTGGAGCGGACGGCGGGTTTTGTCTTGGTGAATTCAAGAGATTTCCTTCTTTTTGGCGAATAAACCCTTTTTTGGCAAAGGCAGAGTACATTCAATGGTTGCTAGGTGCAGATTTGTTCAAGTGGTTGCGAAATGACCTGTGCATGTTGAGAAAAATTTGTCTTCTTCGTCTTTTCAAGCGCGAAGACTCAGATCGGAGTCTGCCTTGGCTTCAGGTAATTTCACCTAGCCATATTTCGTAATAACAGCATTCAGTACTATGCTACGGAGCTTCAAATTCGGTTCTGAATAGTCGGATCCATTTATTCCCACACGCGCTTACAAGAAAATTAATATTGAAAGTGTAATTGTGCCCTCTCAAAGTTGAAATATGCGGACCAGGAGAGCATGTTATCCGACCCCTTCAGACGGAATTACATTCACGATAAGACCTTCACGGCAGAAACAGCCAATGCGGCAAAATCCAGAGAAAATTGTAAAGCAAAAGTGGAGAGTTCGAAACTGCTCCGGTCCTTTTGACAGTCTTCATGACGATATTTTGATATCTATTATGATAGCTCTCAGCTCTTCGGCAAACTCTCCTGCTGATCTTGTTAGCACGATGCTTACGTGTAGAAGGTTCTGTGCAACTGTAACGCTTCCTCAGGTGCTTGCCCATGCTTCCATGATGGCTCTTTCAGTAAAAGCTTCAAAATGGTCAGATGATGCTCATAGATTTTTGAAAAGATGCGCAGACGCAGGCAATCGGGAGGCCTGTTACACACTTGGCATGATTCACTTCTATTGCCTCAGGAACAGGGTTTCAGGTCTGGCCTTGATGGCAGAGGCTGCAATTGCATCGCATCCAGCTGCTCTCCATTCTTTAGCTGTTATACAGTTCAATGGTAGTGGAGGATCAAGAAAGGATAAAGATTTGAAAGCAGGAGTAGTTCTATGTGCGAAAGCAGCAGCTCTTGGCCAGGTAGATGCGATGCGAGAACTTGGCCATTGCTTGCAGGATGGCTACGGAGTGACGAAGAATGTTGCAGAGGGAAGGAAATACCTTCTAGAAGCTAATGCAAGAGAGGCTGAGGTTGTTAGAGAACCATCTATGCAGGTTTCTGTTGATGCCAAGCGACAGTCTCGCATAATATGCAATGGAGCTTATGCCCATCTAGAACTGCAAAGTCAGTCTCTGCTAAATAAGTTGGGTGGTTCTCTGTTGCGGGGCCATGCTTCTGTTAGTGACCAGTACTCTGTTCAAAGGCTCATTGAAAGAGATGACTGCTCATCCTTTAGTGATTTTGGCTGCAAAACGCTGCCTGTAAATATTTATGTGGCTAATGCATTTCTTGTGGATTGGTTTGCTGCACATCCACCGGAGTTAGGTTTAAGATTATGTTCTCATTCAAAATGTGGGCGACCAGAAACCCGAAGACATGAATTCAGAAGGTGTTCTGCATGTGGTTCTGTCAATTATTGCTCACGTGCTTGTCAAGCTATGGACTGGAAACTCTATCACAGACATCACTGTGCACCAGTGGCAGATTGGGAGGAACATGAAGAAATTGATATAGACGAAGAGGATAATATTGAGGATCACATCCTTGCAGATAACTTTGATGACTCTTAGGGGCTATCCTCAACACGTTTCTTTTTTAACAAACTTGATTATATAGCAACTACTTTAGTTTTTTGGGCCATGTTTTGATGTCAAGAAAAGCACCTGGGTATCATTTCATAACATATATGAGAGCAGAGTACCGTCTTTGGTAGCTTTAGCAACACTGCTCTTGATGCATGCACTTGGGAGCCAGATCGTCATTCTTTGTTCTGCAGGTCTGAAAATTTTGAGATACAGTTAGCTTCATTGTTGCCCATCAAAGTCTTGTGTTGTGGTGCTTTCTGTTTGTAAAAGTGCGAGGATTTTATATGCCTACGAGTGGAGCTGCAAAATGCTTGGCATCGTGATTGAATTGATGCCATTCTGACAGTCATAGACGATCAAATCAGGCCAAGTGAATCCGTTGGTATTCCATTTATATGTGCATGCATGGAATTCTATTTTTGCAACCTTGTATGCAGAAATGCTCGTATATCTAGCATTTACGGTTTCCCAGGTTTCTTTAATAATACACTACCATATAAAGTCCGATACTCTTTTGTGCATTAAACATAGATGTTTGTTGCATTTTGCCACTTGCATTAGCTGTTAAATTAATTTGTGAGAACTGTCTAACTAATGTTTGCCTTCCACAGTTCTATATGATATTTTTATTAATTTATTGAGTC

Ace file of the UniGene sp_v1.1_unigene6081

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger (MYND type) family protein / F-box family protein	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	zinc finger family protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	65%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, MYND-type	IPR002893	-	65%
Blast2go	Sel1-like	IPR006597	-	65%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB59

Fln msg: your sequence is longer than subject: 414 - 264

Fln protein: MRTRRACYPTPSDGITFTIRPSRQKQPMRQNPEKIVKQKWRVRNCSGPFDSLHDDILISIMIALSSSANSPADLVSTMLTCRRFCATVTLPQVLAHASMMALSVKASKWSDDAHRFLKRCADAGNREACYTLGMIHFYCLRNRVSGLALMAEAAIASHPAALHSLAVIQFNGSGGSRKDKDLKAGVVLCAKAAALGQVDAMRELGHCLQDGYGVTKNVAEGRKYLLEANAREAEVVREPSMQVSVDAKRQSRIICNGAYAHLELQSQSLLNKLGGSLLRGHASVSDQYSVQRLIERDDCSSFSDFGCKTLPVNIYVANAFLVDWFAAHPPELGLRLCSHSKCGRPETRRHEFRRCSACGSVNYCSRACQAMDWKLYHRHHCAPVADWEEHEEIDIDEEDNIEDHILADNFDDS*

Protein Length: 415

Fln nts: GGTGCATGGCCATTGATATACCTGTAATGTGAAGGGTTTTATTGACGGCTGAGTTCTTTTAAGGAGCCTTCTGTCTGCTTTTACTCGGTCTGTGGTTTGGAGCGGACGGCGGGTTTTGTCTTGGTGAATTCAAGAGATTTCCTTCTTTTTGGCGAATAAACCCTTTTTTGGCAAAGGCAGAGTACATTCAATGGTTGCTAGGTGCAGATTTGTTCAAGTGGTTGCGAAATGACCTGTGCATGTTGAGAAAAATTTGTCTTCTTCGTCTTTTCAAGCGCGAAGACTCAGATCGGAGTCTGCCTTGGCTTCAGGTAATTTCACCTAGCCATATTTCGTAATAACAGCATTCAGTACTATGCTACGGAGCTTCAAATTCGGTTCTGAATAGTCGGATCCATTTATTCCCACACGCGCTTACAAGAAAATTAATATTGAAAGTGTAATTGTGCCCTCTCAAAGTTGAAAT_-_ATGCGGACCAGGAGAGCATGTTATCCGACCCCTTCAGACGGAATTACATTCACGATAAGACCTTCACGGCAGAAACAGCCAATGCGGCAAAATCCAGAGAAAATTGTAAAGCAAAAGTGGAGAGTTCGAAACTGCTCCGGTCCTTTTGACAGTCTTCATGACGATATTTTGATATCTATTATGATAGCTCTCAGCTCTTCGGCAAACTCTCCTGCTGATCTTGTTAGCACGATGCTTACGTGTAGAAGGTTCTGTGCAACTGTAACGCTTCCTCAGGTGCTTGCCCATGCTTCCATGATGGCTCTTTCAGTAAAAGCTTCAAAATGGTCAGATGATGCTCATAGATTTTTGAAAAGATGCGCAGACGCAGGCAATCGGGAGGCCTGTTACACACTTGGCATGATTCACTTCTATTGCCTCAGGAACAGGGTTTCAGGTCTGGCCTTGATGGCAGAGGCTGCAATTGCATCGCATCCAGCTGCTCTCCATTCTTTAGCTGTTATACAGTTCAATGGTAGTGGAGGATCAAGAAAGGATAAAGATTTGAAAGCAGGAGTAGTTCTATGTGCGAAAGCAGCAGCTCTTGGCCAGGTAGATGCGATGCGAGAACTTGGCCATTGCTTGCAGGATGGCTACGGAGTGACGAAGAATGTTGCAGAGGGAAGGAAATACCTTCTAGAAGCTAATGCAAGAGAGGCTGAGGTTGTTAGAGAACCATCTATGCAGGTTTCTGTTGATGCCAAGCGACAGTCTCGCATAATATGCAATGGAGCTTATGCCCATCTAGAACTGCAAAGTCAGTCTCTGCTAAATAAGTTGGGTGGTTCTCTGTTGCGGGGCCATGCTTCTGTTAGTGACCAGTACTCTGTTCAAAGGCTCATTGAAAGAGATGACTGCTCATCCTTTAGTGATTTTGGCTGCAAAACGCTGCCTGTAAATATTTATGTGGCTAATGCATTTCTTGTGGATTGGTTTGCTGCACATCCACCGGAGTTAGGTTTAAGATTATGTTCTCATTCAAAATGTGGGCGACCAGAAACCCGAAGACATGAATTCAGAAGGTGTTCTGCATGTGGTTCTGTCAATTATTGCTCACGTGCTTGTCAAGCTATGGACTGGAAACTCTATCACAGACATCACTGTGCACCAGTGGCAGATTGGGAGGAACATGAAGAAATTGATATAGACGAAGAGGATAATATTGAGGATCACATCCTTGCAGATAACTTTGATGACTCTTAG___GGGCTATCCTCAACACGTTTCTTTTTTAACAAACTTGATTATATAGCAACTACTTTAGTTTTTTGGGCCATGTTTTGATGTCAAGAAAAGCACCTGGGTATCATTTCATAACATATATGAGAGCAGAGTACCGTCTTTGGTAGCTTTAGCAACACTGCTCTTGATGCATGCACTTGGGAGCCAGATCGTCATTCTTTGTTCTGCAGGTCTGAAAATTTTGAGATACAGTTAGCTTCATTGTTGCCCATCAAAGTCTTGTGTTGTGGTGCTTTCTGTTTGTAAAAGTGCGAGGATTTTATATGCCTACGAGTGGAGCTGCAAAATGCTTGGCATCGTGATTGAATTGATGCCATTCTGACAGTCATAGACGATCAAATCAGGCCAAGTGAATCCGTTGGTATTCCATTTATATGTGCATGCATGGAATTCTATTTTTGCAACCTTGTATGCAGAAATGCTCGTATATCTAGCATTTACGGTTTCCCAGGTTTCTTTAATAATACACTACCATATAAAGTCCGATACTCTTTTGTGCATTAAACATAGATGTTTGTTGCATTTTGCCACTTGCATTAGCTGTTAAATTAATTTGTGAGAACTGTCTAACTAATGTTTGCCTTCCACAGTTCTATATGATATTTTTATTAATTTATTGAGTC

Fln Alignment:

sp_v1.1_unigene6081___MAEAAIASHPAALHSLAVIQFNGSGGSRKDKDLKAGVVLCAKAAALGQVDAMRELGHCLQDGYGVTKNVAEGRKYLLXXXXXXXXXXXXPSMQVSVDAKRQSRIICNGAYAHLELQSQSLLNKLGGSLLRGHASVSDQYSVQRLIERDDCSSFSDFGCKTLPVNIYVANAFLVDWFAAHPPELGLRLCSHSKCGRPETRRHEFRRCSACGSVNYCSRACQAMDWKLYHRHHCAPVADWXXXXXXXXXXXXXXXXXXLADNFDDS
D5AB59______________MAEAAIASHPAALHSLAVIQFNGSGGSRKDKDLKAGVVLCAKAAALGQVDAMRELGHCLQDGYGVKKNVAEGRQYLLEANAREAEVVREPSMQASAHAELQSLIICNGGYAHLNLQSQSLLNKLSGSLVQGHTSVSDQYSVQRLIERDDSSSLSDFSCKMMPSNIYVANAFLVDWFAEHPPELGLRLCSHSKCGRPETRRHEFRRCSACGSVNYCSRACQAMDWKLYHRHHCAPVADWEEHEEIDRDEEDNIEDHILADNLDAS

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
269		25		75	0.996473
638			88	11	0.923564
772			11	88	0.923564
774			11	88	0.923564
775	11	88			0.923564
776	88	11			0.923564
777		12	87		0.992554
779	85			14	0.993533
780	85		14		0.993533
785			22	77	0.999999
788	77		22		0.999999
789	66	11		22	0.999999
790	66		22	11	0.999999
791	88	11			0.923564
792	11	22		66	0.999999
793		22	77		0.999999
794			77	22	0.999999
796		77	22		0.999999
799	77	22			0.999999
802	77			22	0.999999
803		22		77	0.999999
804	22		77		0.999999
863		12		87	0.992554
870	87		12		0.992554
872	12			87	0.992554
873		87	12		0.992554
1390		75		25	0.996473
1459	14		85		0.993533
1467	14		85		0.993533
1886			12	87	0.999964
1888		12	87		0.999964
1892		12	87		0.999964
1894		87		12	0.999964
1895	87			12	0.999964
1897	87		12		0.999964
1898		12		87	0.999964
1899		87		12	0.999964
1904		12		87	0.999964
2144	85			14	0.993533
2156	10			90	0.90298
2160	90		10		0.90298
2161			10	90	0.90298
2185	77		22		0.999999
2246	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain