SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6080

Length: 1421 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene6080 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein kinase AFC2 n=3 Tax=Arabidopsis RepID=AFC2_ARATH	-	-	2.0e-34	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	protein kinase	-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	mRNA processing	GO:0006397	Biological Process	69%
Blast2go	protein binding	GO:0005515	Molecular Function	69%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	69%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	69%
Blast2go	Protein kinase-like domain	IPR011009	-	69%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACK0

Fln msg:

Fln protein: MACVAKYHRPLNVLDESPRKRRKLTSSWDVLPSELQSQPTIISADPENGDGKVSVPISSGAEHSIPSDHSRSASSALKPKAGISRNGSPPWRNDDKDGHYVFELGENLTPRYKILSKMGEGAFGQVLECWDRKSKDFVAIKIVRGVQKYREAAMIEIEALLEVSKYDKNSTRIR*

Protein Length: 176

Fln nts: ATGGGGGACATGCGAGATTAGTTGGGCCTCACAAACTTTATCTTTGTTCTCTTTCCTCTTCGTTCTCAGATCTACAAACCCTAGAAACTGTCGGGAGGGAGCCTGTATTTTCTGCGACTGAAATCTTCCGGACCCCGTGCAATAGCC_-_ATGGCTTGCGTTGCAAAATATCATCGCCCTCTTAATGTGCTCGATGAAAGTCCCAGGAAGCGCAGGAAACTAACTTCATCGTGGGATGTTCTTCCCTCTGAGCTCCAGAGTCAGCCAACTATTATATCTGCCGACCCAGAAAATGGAGATGGAAAAGTAAGCGTCCCTATCTCATCAGGGGCAGAACACTCCATTCCTTCTGACCATAGTCGGTCTGCTTCTTCAGCTTTGAAGCCCAAAGCAGGGATCTCCCGTAATGGATCTCCGCCATGGCGTAACGATGACAAGGATGGCCATTATGTGTTTGAACTTGGAGAGAATTTGACGCCACGCTATAAAATACTCAGTAAAATGGGCGAAGGGGCATTTGGCCAGGTCTTGGAATGCTGGGACCGAAAATCGAAGGATTTTGTAGCTATCAAAATTGTTCGTGGTGTACAAAAATACCGAGAGGCAGCAATGATCGAAATTGAAGCGCTTCTTGAAGTTTCTAAGTATGACAAAAATAGCACACGGATTCGATAA___AGCAGCATGTAGACCATTCGGCGGAGCTTTTTATAGACTTGTTGCAAGGCCTTCTTCGGTTTGAACCCTCTGAACGTTTGACAGCTTTGCAAGCTTTGAGACATCCATTCTTCAGAGAAGGATCGAGATATGGGTACAATTCATGAGTGTATGCATTCGACAATTATTTGGTTGGATCTCCATGAGGCAATGGGTTGTATTTGTGGCCGGAAGAGTTAAGAAGGATGATTGTGCAGATAATGGATCTGCCCTCTCAGCTTGCGGCAGCGATTCATATGCGACGTATTTTTTGAAGTTGGATTTGTTGACAAAAGATTCTTTCAGAATGAAGGACAACCTATGTTTTATGGGTTTGTCCAGGTGGAACTTGAGGACTTTCTGAAATGCTTATTCTGAGGACGCTCAATTCCGATGTAGCCACGGTTCAATCCTCATGATGAGGCTACTCGAAATGAGGCTACGCAAAACTCGGTGGTGTTTGTGACAACTTCGAATATTACGAAAATGTAAAATTGCACATGTATTATAGAACTTTTTGAAAATTATTTGTATTCAACTTACATGTAATGCATCTTTATGTTGAATTGCTGTTCAACTGTTATGATGAAGAGACTGTACAGCCTTCGTGATAAGGACACACTTAACTATGCAACATGCTTATGCTGCGTTTAACTTTGTACGTTACAAAATTGTAAAATGCACATGTATCATACAACATCTAAATAAATTTGTATTCAAGCTGACAAAAG

Fln Alignment:

sp_v1.1_unigene6080___MACVAKYHRPLNVLDESPRKRRKLTSSWDVLPSELQSQPTIISADPENGDGKVSVPISSGAEHSIPSDHSRSASSALKPKAGISRNGSPPWRNDDKDGHYVFELGENLTPRYKILSKMGEGAFGQVLECWDRKSKDFVAIKIVRGVQKYRXXXXXXXXXXXEVSKYDKN
D5ACK0______________MACVAKYHRPLNLLDESPRKRRKLTSSWDVLPSQLQGQPTIIFTNPENGNGKVSAPISSGAEPSIPSDHSRSSSSTLKPKVGISRNGSPPWRNDDKEGHYVFELGENLTPRYKILSKMGEGAFGQVLECWDRKSKDFVAIKIVRGVQKYREAAMIEIDALREVSKYDKN

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1122	10			90	0.90298
1345		30	70		1.0
1374	90			10	0.90298
1386	87		12		0.992554
1403	16	83			0.994512
1404	20			80	0.995493
1407	20			80	0.995493
1415		25	75		0.996473
1416		25		75	0.996473
1418	25	75			0.996473
1419		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain