SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6064

Length: 1211 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6064

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	50S ribosomal protein L25, putative	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	50s ribosomal protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	0.0	72%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	72%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain	IPR011035	-	72%
Blast2go	Ribosomal protein L25, short-form	IPR020055	-	72%
Blast2go	Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain	IPR020056	-	72%
Blast2go	Ribosomal protein L25, beta domain	IPR020057	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0B6

Fln msg:

Fln protein: MWARKSHAVGIYNLIIQRCLRIQTPLTQRTFSQAAVVAVEEDSQQPIADEYPKPDPKYAEIIRALPRERSGRIVAAKLRAKGRIPSIVFGCENGEEGGNKTLVSVETKQMRNLLRKVGESSLLSRTFDLEVKAAPDSEEIVEKGRVLPRLIHINRATDEIVNVTFIRAPPHALLKVDVPLLYRGADACPGIRKGGYLNTIRRTVKFLCPADLIPPYIDVDLSELDIGQKLLMRDLKVHPLLKLLKADQDWPVCKIMGSKFKAQQAGS*

Protein Length: 269

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAGCGTTCATTTTTAGTTGGGACGTCGAAGAGAAATCGCCATTCAATTGACACTATAGCGTTCAACGTTTGCCAGGTAAAAATCGCTCACATGATTCATATTGTGTCCATAACATTGTTTGACATTACCAAACCTAACGATTGTGGACGGTACGCCGATCAGTGCTGCGAACATAAACGACCTCGTCCGACTGGGGTTTTAGTGGGGTTTTTGTTTTACAATTAAGTCAGTCGTGAACCCCTTGTCTGCATCAATCGTTTGATTGTTTTCTATTTCAAGCTGTACCGA_-_ATGTGGGCTAGAAAGTCCCATGCCGTGGGCATATACAATCTAATCATTCAGAGATGTCTGAGGATCCAAACCCCACTTACCCAGAGAACATTTTCTCAAGCAGCAGTAGTAGCAGTTGAAGAGGATTCTCAGCAGCCCATTGCTGATGAATATCCAAAGCCTGATCCAAAATATGCAGAGATCATAAGGGCGCTGCCCCGGGAACGCTCGGGGAGGATCGTGGCTGCAAAGCTCAGGGCGAAAGGAAGAATTCCCAGCATTGTCTTTGGGTGTGAGAATGGAGAAGAAGGTGGAAACAAGACGCTTGTAAGTGTTGAAACCAAGCAGATGAGGAACCTGCTGAGGAAAGTGGGCGAGAGCTCCCTTCTATCAAGGACATTTGATCTGGAGGTCAAGGCTGCTCCTGATTCTGAGGAGATAGTGGAGAAGGGCAGAGTGTTGCCTCGCCTGATTCACATTAATAGAGCCACTGATGAAATTGTTAATGTCACATTCATTCGAGCCCCTCCACATGCTCTGCTGAAGGTTGATGTGCCACTTTTGTATAGAGGAGCAGATGCATGCCCAGGAATTAGGAAAGGTGGGTATCTCAACACGATAAGGAGAACTGTCAAATTTCTTTGCCCAGCTGATCTTATTCCACCATACATTGATGTGGACTTGAGTGAATTGGATATTGGACAGAAATTGTTAATGCGTGATCTTAAAGTCCACCCTTTGTTAAAGTTGTTGAAAGCGGATCAGGATTGGCCTGTATGTAAAATAATGGGATCAAAGTTCAAGGCTCAACAAGCTGGTTCTTAA___GTTGACTTGTAACTCGTGCAACTCTTTGTAGAAGCTATTGGTGGCTTTCGATATTTGAAAAATGTGTTTTTTTTAATAAAAAAATGGAAAAATG

Fln Alignment:

sp_v1.1_unigene6064___YPKPDPKYAEIIRALPRERSGRIVAAKLRAKGRIPSIVFGCENGEEGG-----NKTLVSVETKQMRNLLRKVGESSLLSRTFDLEVKAAPDSEEIVEKGRVLPRLIHINRATDEIVNVTFIRAPPHALLKVDVPLLYRGADACPGIRKGGYLNTIRRTVKFLCPADLIPPYIDVDLSELDIGQKLLMRDLKVHPLLKLLKADQDWPVCKIMGSK
A9P0B6______________YSRVTEAEAEVIQAIPRERTGRFFASKERKSGLVPSVVF---EQEENGLAAVRRKRLLSVESDQIRGLVNKVGHQFFLSRTFELEVVAGPRSSHILEKGRVVPRKVHLRPGTEEILNVVFVWAPKCAKLKVDVPLVFKGEDVCPGLRKGGYLNTIKKTIGYLCPADLIPPYIDIDLSNLDIGEKLHVRDINVHPSLKLLSGDDSLPICKMMGTR

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
290		25	75		0.996473
305		75		25	0.996473
341		75		25	0.996473
446			11	88	0.923564
652	90		10		0.90298
653		90	10		0.90298
654		90	10		0.90298
685	11			88	0.923564
686	88	11			0.923564
788		11		88	0.923564
794	88	11			0.923564
795	88		11		0.923564
797		11		88	0.923564
800			11	88	0.923564
802	88	11			0.923564
803		11		88	0.923564
804			88	11	0.923564
806		88	11		0.923564
807	88		11		0.923564
809	88			11	0.923564
810			11	88	0.923564
814		11		88	0.923564
823		88	11		0.923564
826		88	11		0.923564
827	88			11	0.923564
828		88	11		0.923564
831		11	88		0.923564
836		16	83		0.999991
837		83	16		0.999991
841	75	16		8	0.99999
842		25	75		1.0
843	8		75	16	0.99999
845			16	83	0.999991
847	83	16			0.999991
851	16		83		0.999991
1055	64		35		1.0
1136		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain