SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6060

Length: 2517 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6060
CCTGTTAAACAGAATCAACCAAAGACTGCGGGTCCTCCCGCCAAGAGGAACACTAGGGCGAAGCCCTTGGTGGTGAACGAGGTTGCTGCCGTCGTGACCTTGGCTGTCACTCACGTTAGTTTGAACGCAGTTAAGGAAAACCATCAGGCAACTGCTCAGAAGGAAAAAATGGACGATGATGAGAGCGCTGGAAGAAGCGCCGACAAGGCCATTGCTCCAGATGTCGATGATAACGCTGCTCCTCTTCCTGACAAGGTTTCCGTAGGTGGATCTCCACTTTACAAAATAGAAAGAAAATTGGGTAAAGGTGGGTTTGGACAAGTTTATGTAGGACGTCGAATGTCTGGTGGGTCTGAGCGAACTACTGGTCCTGGTGCCGTTGAGGTTGCTTTGAAGTTTGAACACAGAACGAGTAAAGGTTGCAATTATGGTCCTCCATATGAGTGGCAAGTTTACAATACTCTTGGTGGAAGTCATGGAGTTCCCCGGGTACACTATAAAGGTCGTCAAGGAGATTATTATGTTATGGTTATGGATATGCTGGGTCCAAGCCTATGGGATGTTTGGAATACTTCTGGTCAAGCGATGTCGACTGAGATGGTGGCATGCATTGCTGTTGAAGCTGTTTCCATATTGGAGAAGATGCACTCAAGAGGATATGTCCACGGGGATGTGAAGCCTGAAAACTTTTTGCTTGGTCCACCAGGAACGGCAGATGAAAAGAAACTTTTCCTTGTTGATCTTGGGTTGGCGACAAGATGGAGGGACAGCTCTACAGGGTTGCATGTAGAATATGATCAAAGGCCAGATGTATTCAGGGGCACTGTTCGATATGCCAGTGTACATGCCCATCTAGGGAGAACTGGAAGTAGGAGAGATGATCTTGAGTCACTGGCTTATACGCTTATATTTCTTCTTCGAGGGCGTTTACCCTGGCAAGGATACCAGGGTGAGAACAAAGGTTTCCTGGTTTGCAAGAAAAAAATGGCCACATCCCCAGAGATGTTGTGCTGCTTTTGCCCGCCGCCATTTAAACTATTTCTGGAATATGTGGTGAATTTGAAATTTGATGAAGAGCCCTATTATGCAAAATATATTTCACTTTTTGATGGAATCATTGGTCCAAATCCAGCTGTCAGGCCAATAAACACTGACGGAGCTTTAAAGGTTGGTCAAAAGAGAGGTAGGTTGACTATGGAGGAAGATGATGATGAACAGCCCAAGAAGAAGGTTCGGCTTGGTATGCCTGCTACACAATGGATCAGTGTTTATAATGCTCGGCGGCCAATGAAACAGAGATACCACTATAATGTGGCTGATACAAGACTTGCACAGCATGTTGAGAAAGGAAATGAAGATGGTCTTTTTATAAGTAGTGTAGCTTCTTGCTCAAATCTGTGGGCTCTTATTATGGATGCGGGAACTGGATTCACTGCACAAGTTTATGAGCTTTCTCAGTGCTTTCTTCACAAGGAATGGATCATGGAACAATGGGAGAAAAACTATTACATAAGTGCAATTGCGGGGGCCAACAGTGGGAGCTCCCTGGTAGTAATGTCTAAAGGCACACAGTACACACAGCAGTCTTACAAGGTCAGCGATTCTTTTCCATTTAAATGGATAAACAAAAAGTGGAGAGAGGGATTCTATGTTACTTCTATGGCTTCTGCAGGAAGTAGATGGGGTGTTGTCATGTCTCGAAATGCAGGTTTTACAGAACAGGTAGTTGAACTTGATTTTCTATATCCTAGTGAGGGCATCCACAGGCGGTGGGATCATGGGTATCGTATAACTGCAACCGCAGCAACATGGGACCAGGCAGCTTTTGTTTTGAGTGTTCCTAGACGAAAGCCTACGGATGAAACTCAGGAGACTCTTCGCACATCTGCATTTCCAAGTACTCATGTTAAGGAAAAGTGGGCTAAGAATCTATATATTGCTTCTGTTTGTTATGGCCGCACAGTATCGTGAAGCACCAATATGCTGAAGTTTTCTGATGTAAGCCTTGATGCTTCTACCTTGTGCATACAGCTGATCTCCTCTGGCATATCTTCTGTATGTTGCAAGTTTGTAAAATTAAAAAATCCCCTGAAAGGTGATTTTTGATCAAGATGTGCAGGTTAAGGAAATTTTGATTTGCAAGCTTGGTGCTTGTATTCGTAAGCTCATGTCATCTCATCTTTATTGATGCTCAATATAAAAATGAAGTTACAACTGCATTAGATAGATGTGTATGGTAGAAACTTTTACATCACTGGCTCCCAGTACATCAGTCTATCTGATTGTTAAGCTGAGGTGTGAGTACTTATCTTTAAACCTGTGTATAGTATGAAATAAATCATGATGAGTCATTACAGATACATGGCAAATTTTCCATTTACATTGTTATTGTGCTTGTAACCAACCATGTAAGGGGAGCTTTAATTGTAGTCAAGATGCCTGTACACATCAGCACTTATGGTATAGCTAAAACTACACAATGATTATAATATTCAGTTCACATTTATACATCTTTTC

Ace file of the UniGene sp_v1.1_unigene6060

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	casein kinase, putative	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	91%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	91%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	91%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	91%
Blast2go	Protein kinase-like domain	IPR011009	-	91%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	91%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA41

Fln msg: your sequence is longer than subject: 601 - 444

Fln protein: MDDDESAGRSADKAIAPDVDDNAAPLPDKVSVGGSPLYKIERKLGKGGFGQVYVGRRMSGGSERTTGPGAVEVALKFEHRTSKGCNYGPPYEWQVYNTLGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNTSGQAMSTEMVACIAVEAVSILEKMHSRGYVHGDVKPENFLLGPPGTADEKKLFLVDLGLATRWRDSSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPEMLCCFCPPPFKLFLEYVVNLKFDEEPYYAKYISLFDGIIGPNPAVRPINTDGALKVGQKRGRLTMEEDDDEQPKKKVRLGMPATQWISVYNARRPMKQRYHYNVADTRLAQHVEKGNEDGLFISSVASCSNLWALIMDAGTGFTAQVYELSQCFLHKEWIMEQWEKNYYISAIAGANSGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFYVTSMASAGSRWGVVMSRNAGFTEQVVELDFLYPSEGIHRRWDHGYRITATAATWDQAAFVLSVPRRKPTDETQETLRTSAFPSTHVKEKWAKNLYIASVCYGRTVS*

Protein Length: 602

Fln nts: CCTGTTAAACAGAATCAACCAAAGACTGCGGGTCCTCCCGCCAAGAGGAACACTAGGGCGAAGCCCTTGGTGGTGAACGAGGTTGCTGCCGTCGTGACCTTGGCTGTCACTCACGTTAGTTTGAACGCAGTTAAGGAAAACCATCAGGCAACTGCTCAGAAGGAAAAA_-_ATGGACGATGATGAGAGCGCTGGAAGAAGCGCCGACAAGGCCATTGCTCCAGATGTCGATGATAACGCTGCTCCTCTTCCTGACAAGGTTTCCGTAGGTGGATCTCCACTTTACAAAATAGAAAGAAAATTGGGTAAAGGTGGGTTTGGACAAGTTTATGTAGGACGTCGAATGTCTGGTGGGTCTGAGCGAACTACTGGTCCTGGTGCCGTTGAGGTTGCTTTGAAGTTTGAACACAGAACGAGTAAAGGTTGCAATTATGGTCCTCCATATGAGTGGCAAGTTTACAATACTCTTGGTGGAAGTCATGGAGTTCCCCGGGTACACTATAAAGGTCGTCAAGGAGATTATTATGTTATGGTTATGGATATGCTGGGTCCAAGCCTATGGGATGTTTGGAATACTTCTGGTCAAGCGATGTCGACTGAGATGGTGGCATGCATTGCTGTTGAAGCTGTTTCCATATTGGAGAAGATGCACTCAAGAGGATATGTCCACGGGGATGTGAAGCCTGAAAACTTTTTGCTTGGTCCACCAGGAACGGCAGATGAAAAGAAACTTTTCCTTGTTGATCTTGGGTTGGCGACAAGATGGAGGGACAGCTCTACAGGGTTGCATGTAGAATATGATCAAAGGCCAGATGTATTCAGGGGCACTGTTCGATATGCCAGTGTACATGCCCATCTAGGGAGAACTGGAAGTAGGAGAGATGATCTTGAGTCACTGGCTTATACGCTTATATTTCTTCTTCGAGGGCGTTTACCCTGGCAAGGATACCAGGGTGAGAACAAAGGTTTCCTGGTTTGCAAGAAAAAAATGGCCACATCCCCAGAGATGTTGTGCTGCTTTTGCCCGCCGCCATTTAAACTATTTCTGGAATATGTGGTGAATTTGAAATTTGATGAAGAGCCCTATTATGCAAAATATATTTCACTTTTTGATGGAATCATTGGTCCAAATCCAGCTGTCAGGCCAATAAACACTGACGGAGCTTTAAAGGTTGGTCAAAAGAGAGGTAGGTTGACTATGGAGGAAGATGATGATGAACAGCCCAAGAAGAAGGTTCGGCTTGGTATGCCTGCTACACAATGGATCAGTGTTTATAATGCTCGGCGGCCAATGAAACAGAGATACCACTATAATGTGGCTGATACAAGACTTGCACAGCATGTTGAGAAAGGAAATGAAGATGGTCTTTTTATAAGTAGTGTAGCTTCTTGCTCAAATCTGTGGGCTCTTATTATGGATGCGGGAACTGGATTCACTGCACAAGTTTATGAGCTTTCTCAGTGCTTTCTTCACAAGGAATGGATCATGGAACAATGGGAGAAAAACTATTACATAAGTGCAATTGCGGGGGCCAACAGTGGGAGCTCCCTGGTAGTAATGTCTAAAGGCACACAGTACACACAGCAGTCTTACAAGGTCAGCGATTCTTTTCCATTTAAATGGATAAACAAAAAGTGGAGAGAGGGATTCTATGTTACTTCTATGGCTTCTGCAGGAAGTAGATGGGGTGTTGTCATGTCTCGAAATGCAGGTTTTACAGAACAGGTAGTTGAACTTGATTTTCTATATCCTAGTGAGGGCATCCACAGGCGGTGGGATCATGGGTATCGTATAACTGCAACCGCAGCAACATGGGACCAGGCAGCTTTTGTTTTGAGTGTTCCTAGACGAAAGCCTACGGATGAAACTCAGGAGACTCTTCGCACATCTGCATTTCCAAGTACTCATGTTAAGGAAAAGTGGGCTAAGAATCTATATATTGCTTCTGTTTGTTATGGCCGCACAGTATCGTGA___AGCACCAATATGCTGAAGTTTTCTGATGTAAGCCTTGATGCTTCTACCTTGTGCATACAGCTGATCTCCTCTGGCATATCTTCTGTATGTTGCAAGTTTGTAAAATTAAAAAATCCCCTGAAAGGTGATTTTTGATCAAGATGTGCAGGTTAAGGAAATTTTGATTTGCAAGCTTGGTGCTTGTATTCGTAAGCTCATGTCATCTCATCTTTATTGATGCTCAATATAAAAATGAAGTTACAACTGCATTAGATAGATGTGTATGGTAGAAACTTTTACATCACTGGCTCCCAGTACATCAGTCTATCTGATTGTTAAGCTGAGGTGTGAGTACTTATCTTTAAACCTGTGTATAGTATGAAATAAATCATGATGAGTCATTACAGATACATGGCAAATTTTCCATTTACATTGTTATTGTGCTTGTAACCAACCATGTAAGGGGAGCTTTAATTGTAGTCAAGATGCCTGTACACATCAGCACTTATGGTATAGCTAAAACTACACAATGATTATAATATTCAGTTCACATTTATACATCTTTTC

Fln Alignment:

sp_v1.1_unigene6060___MHSRGYVHGDVKPENFLLGPPGTADEKKLFLVDLGLATRWRDSSTGL--HVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPEMLCCFCPPPFKLFLEYVVNLKFDEEPYYAKYISLFDGIIGPNPAVRPINTDGALKVGQKRGRLTMEEDDDEQPKKKVRLGMPATQWISVYNARRPMKQRYHYNVADTRLAQHVEKGNEDGLFISSVASCSNLWALIMDAGTGFTAQVYELSQCFLHKEWIMEQWEKNYYXXXXXXXXXXXXLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFYVTSMASAGSRWGVVMSRNAGFTEQVVELDFLYPSEGIHRRWDHGYRITATAATWDQAAFVLSVPRRKPTDETQETLRTSAFPSTHVKEKWAKNLYIASVCYGRTVS
D5AA41______________MHSKGYVHGDVKPENFLLGQPGTPDEKRLYLIDLGLATKWRDSSNTQPKHVDYDQRPDVFRGTVRYASVHAHLGRTSSRRDDLESLAYTLIFLLRGRLPWQGYQGDNKGFLVCKKKMSTSPETLCCFCPQPFKQFLEFVINLKFDEEPNYSKLISLFDGIIGPNPAVRPIITDGAQKVGQKRGRLSMGEDDEEQPKKKIRLGIPASQWISVYNARRPMKQRYHYNVADSRLAQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFTAQVYELSQSFLHKEWIMEQWEKSYYITAIAGANSGSSLVVMSKGTPYTQQSYKVSDFFPFKWINKKWKEGFYVTSMSTAASRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDGGFRITATAATWDQAAFILSVPKRKPGDETQETLRTSAFPSTHVKEKWAKNLYLAAVCYGRTVS

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
100		62	37		1.0
102	37			62	1.0
103	37		62		1.0
105		62	37		1.0
106			37	62	1.0
108		37		62	1.0
109		62		37	1.0
110	62		37		1.0
113		62	37		1.0
236		81		18	0.999994
313		12	87		0.999964
317			12	87	0.999964
517	80	13	6		0.999961
521		13		86	0.999973
1026	22	77			0.999999
1057		10		90	0.90298
1713		20		80	0.995493
1736		20		80	0.995493
1803		20		80	0.995493
1821		15	53	30	1.0
1822		7	76	15	0.999983
1823	7	61	7	23	1.0
1824	76			23	1.0
2016			14	85	1.0
2029	85			14	1.0
2030			14	85	1.0
2031	85			14	1.0
2034		4	85		0.999726
2353	45	54			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain