SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6050

Length: 2311 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6050
ATGGGGACCATCATGGATCAGATCGCAGATGGGTTTTCCAGGCCTTCCTGTAAACATTGAGCCATTGGGTATAGTTTTCCCAGTTTGCGCAGGTTAATTTTTGATCTCCTTCATGGCGACGAAGAAGTTGCAGAGCCCCATGTTCTCTGATACGAACTGTGGTTCCTTGTTGCAAGATCTAGAGTTGATATGGGATGAAGTGGGTGCGAGTGATGGTGAAAGGGAGAAGATGTTGCTGCAATTAGAGCAAGAATGCTTAGAGGTCTACAGATAGGAAGGTGGATCAAGCTAATCTCTCAAGGGCTCGCTTGCATCAGTTACTTGCCGATTCTGAAGTCGAGCTAGAACATCTCATCTCTGCTCTTGGTGAAAGATCTTTCGTAGGCCGGCCAGAGAAGCAAACGGGTACGTTGAAGGAACAACTAGCTGCAATTGCGCCAGGTTTGGGTGATCTAAGGAAGAAAAAGGAGGAGAGGGTCAAGAAGTTTATGGACGTTCAAGGGCAGATTCAGAGTATCTGTGCAGAAATTGCAGGAATTTTGAATGTCAATGGTTTATGTACAACTCCAAAAGTGGATGAGCATGATCTATCTCTAAAGAAACTTGACGAATTCCATGCTCAACTTCAAGAGCTTCATAGAGAAAAGAATGATAGACTTCAGAAAGTTTTTGACTATGTTAACACTGTGCATGCTCTTTCGGCTGTCATGGGGCTCGACTTCTCTAAGATTGTTTCTGAAGTTCATCCAAGTTTGGACGATTCTGCAGGCAATCAGTCAAAAAGCATAAGTAATGACACCCTTGCCAAGTTGGCCAAAACGGTTGAATCTCTAAAAGAAGAGAAGCAGCAGCGGTTGCAAAAGATCCAAGAACTGGGCACAACATTGATTGAATTGTGGAATCTAATGGATATCACTATGGAGGAACAGAAACATTTTGATCATGTAACTTGCTACATTTCAGCTTCTGTGGATGAGGTGTCAATGCCAAGAGCGCTTGCTTCCAATATCATTGACCAGGCTGAGGTTGAAGTGAAGAGATTGGATCGGTTAAAGGCTGGAAAAATGAAGGAGCTTCTGCATAAAAAACAAACAGAGCTTGAAGAGATATACCGGAAGGCTCATATGGAAATAGACACCAACTCTGCACAGGAGAAGATAATGGCTATGATTGATTCTGGAACCATTAATCATTCGGATCTTCTAGCAAGCATGGATGATCAGATTTCCAAAGCAAAAGAAGAAGCACTCAGTAGAAAAGAAATAATGGAGAAGGTGGACAAATGGATGGCAGCTTGTGAAGAAGAAAGTTGGCTTGAAGATTACAACAGGGATGAAAACAGGTACAGTGTGAGTAGAGGTGCCCATATAAACCTTAAGCGTGCAGAACGAGCCCGTGTGATTGTCAATAAAATTCCTGCACTTGTGGATTCATTGATGGCAAAAACTAGGGCTTGGGAGGAAGAAAGGGGAACAACTTTCTTCTATGATGAAGTTCCACTTTTAGCAATGCTAGATGAATACAACATGATGAGACAGGAGAGAGAAGAGGAGAAACTGAGGCTCAGGGATAAAAAGCGCTTTCAGGGCCAGTTGGCAAGTGAACCAGAACCATTTTTTGTTGCAAAGCCAACTCCCCACAGGCAACTTTCAACAAAGAGAAGTACAGGGCTACGTCCAAATGGAAATTCTGTGGATGGCACTCCTTTGAATCACCGATTATCTCTCGGTGTTCAGCAAACTGCTCGGAAAGGCTTGTCTGTCCATAGAGAAGGAAAAAGGGAGCTTAATAGATCAATGATCCCTCAAAATTATTTTTCTCTTTCTAAGGAAGATTCAACTTCACAAGCTTCTGCAAATGGCTCAACACTGTCCTCCTCATAGGGGAAGAATTGCATTTACTATTTAGTGCAGTTTGAGGATTATTACACCGCATACATTGAGGTAGTATGTGCAATGCATACAACATAAGGTGTGGCCATTCGCTACTGAACAGAGTCAAAATTCAAACAATCAACCAATTAGGTTTCCAGGTTCTGTGTGAGGATTTTGGTGAATTGCATATATCCATGGCTTTCTTTGGATGCAGTTTGGATCGGGTTTTTGCCTGTATCCACTTCATCTTGCTCCATTATAACAAATTTGTAAAGAATATTTCATTGCAGGTGTTTTCAATAATTAGGTCAGTGGGCTTGGTTCTCCTGGCTTATATGAGGTCATAGTTCTTAGTTCAATCATGAAAAACAAGTAACTTGCTTGTTGTACATTAAATAAATATTAAATCAATCAGTTCATCTTGATACCTAATATCA

Ace file of the UniGene sp_v1.1_unigene6050

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein regulator of cytokinesis, putative n=1 Tax=Ricinus communis RepID=B9SYY2_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	microtubule-associated protein map65-1a	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	anaphase	GO:0051322	Biological Process	77%
Blast2go	microtubule bundle formation	GO:0001578	Biological Process	77%
Blast2go	cytokinesis	GO:0000910	Biological Process	77%
Blast2go	microtubule nucleation	GO:0007020	Biological Process	77%
Blast2go	positive regulation of microtubule polymerization	GO:0031116	Biological Process	77%
Blast2go	microtubule binding	GO:0008017	Molecular Function	77%
Blast2go	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	77%
Blast2go	preprophase band	GO:0009574	Cellular Component	77%
Blast2go	spindle	GO:0005819	Cellular Component	77%
Blast2go	phragmoplast	GO:0009524	Cellular Component	77%
Blast2go	nucleus	GO:0005634	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC28

Fln msg: Separated hits, possible frame ERROR between 271 and 273,

Fln protein: MATKKLQSPMFSDTNCGSLLQDLELIWDEVGASDGEREKMLLQLEQECLEVYxxRKVDQANLSRARLHQLLADSEVELEHLISALGERSFVGRPEKQTGTLKEQLAAIAPGLGDLRKKKEERVKKFMDVQGQIQSICAEIAGILNVNGLCTTPKVDEHDLSLKKLDEFHAQLQELHREKNDRLQKVFDYVNTVHALSAVMGLDFSKIVSEVHPSLDDSAGNQSKSISNDTLAKLAKTVESLKEEKQQRLQKIQELGTTLIELWNLMDITMEEQKHFDHVTCYISASVDEVSMPRALASNIIDQAEVEVKRLDRLKAGKMKELLHKKQTELEEIYRKAHMEIDTNSAQEKIMAMIDSGTINHSDLLASMDDQISKAKEEALSRKEIMEKVDKWMAACEEESWLEDYNRDENRYSVSRGAHINLKRAERARVIVNKIPALVDSLMAKTRAWEEERGTTFFYDEVPLLAMLDEYNMMRQEREEEKLRLRDKKRFQGQLASEPEPFFVAKPTPHRQLSTKRSTGLRPNGNSVDGTPLNHRLSLGVQQTARKGLSVHREGKRELNRSMIPQNYFSLSKEDSTSQASANGSTLSSS*

Protein Length: 592

Fln nts: ATGGGGACCATCATGGATCAGATCGCAGATGGGTTTTCCAGGCCTTCCTGTAAACATTGAGCCATTGGGTATAGTTTTCCCAGTTTGCGCAGGTTAATTTTTGATCTCCTTC_-_ATGGCGACGAAGAAGTTGCAGAGCCCCATGTTCTCTGATACGAACTGTGGTTCCTTGTTGCAAGATCTAGAGTTGATATGGGATGAAGTGGGTGCGAGTGATGGTGAAAGGGAGAAGATGTTGCTGCAATTAGAGCAAGAATGCTTAGAGGTCTACAGxxxTAGGAAGGTGGATCAAGCTAATCTCTCAAGGGCTCGCTTGCATCAGTTACTTGCCGATTCTGAAGTCGAGCTAGAACATCTCATCTCTGCTCTTGGTGAAAGATCTTTCGTAGGCCGGCCAGAGAAGCAAACGGGTACGTTGAAGGAACAACTAGCTGCAATTGCGCCAGGTTTGGGTGATCTAAGGAAGAAAAAGGAGGAGAGGGTCAAGAAGTTTATGGACGTTCAAGGGCAGATTCAGAGTATCTGTGCAGAAATTGCAGGAATTTTGAATGTCAATGGTTTATGTACAACTCCAAAAGTGGATGAGCATGATCTATCTCTAAAGAAACTTGACGAATTCCATGCTCAACTTCAAGAGCTTCATAGAGAAAAGAATGATAGACTTCAGAAAGTTTTTGACTATGTTAACACTGTGCATGCTCTTTCGGCTGTCATGGGGCTCGACTTCTCTAAGATTGTTTCTGAAGTTCATCCAAGTTTGGACGATTCTGCAGGCAATCAGTCAAAAAGCATAAGTAATGACACCCTTGCCAAGTTGGCCAAAACGGTTGAATCTCTAAAAGAAGAGAAGCAGCAGCGGTTGCAAAAGATCCAAGAACTGGGCACAACATTGATTGAATTGTGGAATCTAATGGATATCACTATGGAGGAACAGAAACATTTTGATCATGTAACTTGCTACATTTCAGCTTCTGTGGATGAGGTGTCAATGCCAAGAGCGCTTGCTTCCAATATCATTGACCAGGCTGAGGTTGAAGTGAAGAGATTGGATCGGTTAAAGGCTGGAAAAATGAAGGAGCTTCTGCATAAAAAACAAACAGAGCTTGAAGAGATATACCGGAAGGCTCATATGGAAATAGACACCAACTCTGCACAGGAGAAGATAATGGCTATGATTGATTCTGGAACCATTAATCATTCGGATCTTCTAGCAAGCATGGATGATCAGATTTCCAAAGCAAAAGAAGAAGCACTCAGTAGAAAAGAAATAATGGAGAAGGTGGACAAATGGATGGCAGCTTGTGAAGAAGAAAGTTGGCTTGAAGATTACAACAGGGATGAAAACAGGTACAGTGTGAGTAGAGGTGCCCATATAAACCTTAAGCGTGCAGAACGAGCCCGTGTGATTGTCAATAAAATTCCTGCACTTGTGGATTCATTGATGGCAAAAACTAGGGCTTGGGAGGAAGAAAGGGGAACAACTTTCTTCTATGATGAAGTTCCACTTTTAGCAATGCTAGATGAATACAACATGATGAGACAGGAGAGAGAAGAGGAGAAACTGAGGCTCAGGGATAAAAAGCGCTTTCAGGGCCAGTTGGCAAGTGAACCAGAACCATTTTTTGTTGCAAAGCCAACTCCCCACAGGCAACTTTCAACAAAGAGAAGTACAGGGCTACGTCCAAATGGAAATTCTGTGGATGGCACTCCTTTGAATCACCGATTATCTCTCGGTGTTCAGCAAACTGCTCGGAAAGGCTTGTCTGTCCATAGAGAAGGAAAAAGGGAGCTTAATAGATCAATGATCCCTCAAAATTATTTTTCTCTTTCTAAGGAAGATTCAACTTCACAAGCTTCTGCAAATGGCTCAACACTGTCCTCCTCATAG___GGGAAGAATTGCATTTACTATTTAGTGCAGTTTGAGGATTATTACACCGCATACATTGAGGTAGTATGTGCAATGCATACAACATAAGGTGTGGCCATTCGCTACTGAACAGAGTCAAAATTCAAACAATCAACCAATTAGGTTTCCAGGTTCTGTGTGAGGATTTTGGTGAATTGCATATATCCATGGCTTTCTTTGGATGCAGTTTGGATCGGGTTTTTGCCTGTATCCACTTCATCTTGCTCCATTATAACAAATTTGTAAAGAATATTTCATTGCAGGTGTTTTCAATAATTAGGTCAGTGGGCTTGGTTCTCCTGGCTTATATGAGGTCATAGTTCTTAGTTCAATCATGAAAAACAAGTAACTTGCTTGTTGTACATTAAATAAATATTAAATCAATCAGTTCATCTTGATACCTAATATCA

Fln Alignment:

sp_v1.1_unigene6050___MATKKLQSPMFSDTNCGSLLQDLELIWDEVGASDGEREKMLLQLEQECLEVYRxRKVDQANLSRARLHQLLADSEVELEHLISALGERSFVGRPEKQTGTLKEQLAAIAPGLGDLRKKKEERVKKFMDVQGQIQSICAEIAGILNVNGLCTTPKVDEHDLSLKKLDEFHAQLQELHREKNDRLQKVFDYVNTVHALSAVMGLDFSKIVSEVHPSLDDSAGNQSKSISNDTLAKLAKTVESLKEEKQQRLQKIQELGTTLIELWNLMDITMEEQKHFDHVTCYISASVDEVSMPRALASNIIDQAEVEVKRLDRLKAGKMKELLHKKQTELEEIYRKAHMEIDTNSAQEKIMAMIDSGTINHSDLLASMDDQISKAKEEALSRKEIMEKVDKWMAACEEESWLEDYNRDENRYSVSRGAHINLKRAERARVIVNKIPALVDSLMAKTRAWEEERGTTFFYDEVPLLAMLDEYNMMRQXXXXXXXXXXXXXXFQGQLASEPEPFFVAKPTPHRQLSTKRSTGLRPNGNSVDGTPLNHRLSLGVQQT-------ARKGLSVHREGKRELNRSMIPQNYFSLSKEDSTSQASANGSTLSS
D5AC28______________MATKKLQRPMFSDTNCGSLLQDLELIWDEVGASDGEREKMLLQLEQECLEVYRxRKVDQANLSRARLHQLLADSEAELEHLISALGERSFVGRPEKQTGTLKEQLAAIAPALGDLRKKKEERVKKFMDVQVQIQSICAEIAGNLNVNDLCTTPKVDEHDLSLKKLDEFHDQLQELHREKNDRLQKVFDYVNTVHALSAVMGLDFSKIVSEVHPSLDDSAGNQSKSISNDTLAKLAETVESLKEEKQRRLQKIQELGTTLIELWNLMDITMGEQKHFDHVTCYISASVDEVSMPRALASNIIDQAEVEVKRLDRLKAGKMKQLLHKKQTELEEIYRKAHMEIDTNSAQEKIMAMIDSGTINHSDLLASMDDQIAKAKEEALSRKEIMEKVDKWMAACEEESWLEDYNRDENRYSVSRGAHINLKRAERARVIVNKIPALVDSLMGKTRAWEEERGTTFFYDEVPLLAMLDEYNMMRQEREEEKLRLRDKKRLQGQLANEPEPIFVAKPTPHRQLSTKRSTGLRANGNSVDATPLNRRLSLGVQQTGMNGVNPARQGLSVQRDGKREHNRSMIPRNYFSLSKEDSASQPSANGSTVSS

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
1668	88		11		0.923564
1669	88		11		0.923564
1687	90	10			0.90298
1688	90		10		0.90298
1690		10	90		0.90298
1692	90			10	0.90298
1693	90		10		0.90298
1696		10		90	0.90298
1703	90	10			0.90298
1706			90	10	0.90298
1712	30	70			1.0
1775		10	90		0.90298
1799		11	88		0.923564
1800	88		11		0.923564
1804	88		11		0.923564
1811		85		14	0.993533
1813		85	14		0.993533
1814	83		16		0.994512
1815	83	16			0.994512
1816	83			16	0.994512
1817	83		16		0.994512
1819		25		75	0.996473
1822		25		75	0.996473
1823	25			75	0.996473
1825		50		25	0.995533
1826		25		75	0.996473
1827		75		25	0.996473
1828		25		75	0.996473
1882	25			75	0.996473
1883		75		25	0.996473
1884		75	25		0.996473
1885			25	75	0.996473
1886		75	25		0.996473
1954			81	18	0.999994
2116	20		80		1.0
2198		87		12	0.992554
2253	85	14			0.993533
2254		14	85		0.993533
2256	85		14		0.993533
2257	85	14			0.993533
2258	14	85			0.993533
2259	14			85	0.993533
2300	66		33		0.997452
2309	66	33			0.997452
2311		66		33	0.997452
2312		33	33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain