SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6045

Length: 3021 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene6045
ATGCGAACCATCAGACCTCATTAATTTCTGCGGAGATCTTCTTCTGCATCTTTCTCTTCTCTGTGGTTGTTCCCTTTCTATCATTTCATCCTTTAAAATCTACGATGGCGAGCTTAATACCTGGAGAATCATCTGAAGGGAAGGGAACAAAGAAAGACTTTAGCACTGCAATACTTGAGCGTAAGAAGTCTCCTAATCGGTTAGTTGTGGATGAAGCCATAAATGATGATAACTCGGTTGTGGCTCTTAATTCGAAAACAATGGAAACATTGCAGCTTTTCCGGGGTGATACCATTCTTGTTAAGGGTAAAAAGAGAAAGGATACAGTTTGCATTGTTCTGGCTGATGATACCTGTGAAGAGCATAAGATCAGAATGAACAAAGTTGTTAGGTCAAATCTAAGAGTAAGATTAGGGGATGTAGTATCTGTTCATCAGTGCCCAGATGTTAAGTATGGGAAGCGTGTGCATATTCTTCCTATAGATGACACAATTGAAGGTGTTACAGGAAACTTGTTCGATGTGTACTTGAAGCCTTACTTCTTGGAAGCCTATCGCCCAGTAAGAAAAGGAGACCTTTTTCTAGTACGAGGAGGAATGAGAAGTGTAGAATTTAAAATCATTGAGACAGATCCTGGTGAGTATTGTGTTGTTTCTCCAGATACTGAAATTTTTTGTGAGGGAGAGCCAATAAAACGAGAAGATGAAGACAGATTGGATGACGTTGGCTATGATGATGTTGGTGGTGTAAGGAAACAAATGGCACAGATCAGAGAACTAGTTGAATTACCACTAAGGCATCCACAACTTTTCAAATCCATTGGTGTTAAGCCCCCTAAGGGTATTTTGCTTTATGGTCCTCCTGGTTCAGGAAAAACCTTGATTGCTAGGGCAGTGGCAAATGAGACTGGAGCTTTCTTTTTTCTAATTAATGGTCCTGAAATTATGTCAAAGCTTGCTGGAGAAAGTGAAAGCAATCTTAGAAAGGCTTTTGAAGAAGCAGAGAAGAATGCCCCTTCTATCATTTTCATTGATGAAATTGACTCCATAGCTCCAAAGAGGGAGAAAACAAATGGTGAAGTAGAGAGGCGCATTGTATCTCAACTATTGACATTGATGGATGGTCTAAAATCTCGATCTCATGTGATTGTCATGGGAGCAACAAATAGGCCTAACAGCATTGATCCAGCACTTAGAAGGTTTGGTAGGTTTGATCGTGAAATTGACATTGGGGTTCCAGATGAAGTTGGCCGACTGGAAGTTCTTCGCATCCACACAAAGAATATGAAGCTTTCTGAAGATGTTGATCTTGAACGTATTTCGAAGAATACACATGGCTATGTTGGGGCAGATCTTGCAGCTCTTTGCACTGAGGCTGCACTGCATTGTATTAGGGAAAAAATGGATGTCATTGACTTGGAAGATGAAACTATTGATGCGGAAGTTCTGAATTCTATGGCTGTTACAAATGAGCACTTTCAGGCTGCACTGGGCTCTAGTAACCCTTCTGCCCTGCGTGAGACTGTTGTGGAGGTGCCAAATGTTTCTTGGGAGGATATTGGGGGTCTGGAAAATGTCAAAAGAGAGCTTCAGGAGACTGTGCAATATCCGGTGGAACATCCAGAGAAATTCGAGAAGTTTGGTATGTCTCCCTCTAAAGGTGTTCTATTCTATGGACCTCCTGGTTGTGGTAAGACGCTTCTGGCAAAGGCCATTGCCAATGAGTGTCAGGCCAACTTTATCAGTGTGAAAGGCCCAGAGCTCCTAACAATGTGGTTTGGAGAAAGTGAAGCCAATGTGCGTGATATTTTTGATAAGGCTAGGCAGTCAGCACCTTGTGTCCTTTTTTTTGATGAGCTTGATTCGATTGCTACCCAGCGTGGTAGTAGTGCGGGAGATGCTGGGGGTGCGGCAGACAGAGTTTTGAATCAGTTGCTGACTGAGATGGATGGCATGTCTGCCAAGAAAACTGTTTTCATTATTGGAGCTACGAATCGCCCTGACATTATTGATTCGGCTTTATTACGACCTGGTCGCCTTGATCAATTAATATACATACCCTTGCCTGATGAAGCTTCCCGCTTTCAAATCTTTAAAGCATGTTTGCGGAAGTCACCTGTTGCAAAGGATGTTGAAATTGTGACTCTTGCTCAATACACACAAGGATTTAGTGGAGCTGATATTACTGAAATTTGTCAGCGTGCTTGCAAATATGCTATTAGAGAACATATTGAGATGGACATTGAAAGGGAAAGGAAAAGAAAGGAAAACCCTGAAGCCATGGATGAAGATGAAACTGAAGTTGCAGAAATAAAGGCAGCTCATTTTGAGGAATCAATGAAATATGCCAGAAGGAGTGTTAGCGATGCAGATATACGTAAATATCAAGCATTTGCTCAAACATTACAGCAATCTCGAGGTTTTGGGTCAGAATTCCGGTTCACAGATCAGATTATTACTACCACAGGCAGTGCAGGCACCACAGATGCTCTTGTTACACAACGTGCTGTTGATGATGATGATCTGTACAGTTGAAATGGTGAATTACAGGATCACAAAATTATAGGGCTTGTAACATTTTGAGCCAGTATTCTGTGCTTAGCATTTTAACACCACACTTCTGATTCATCACCCAAGTTTCAGAATGTTTGGTATTTGTGATCTTGGTGTATACTCTTGGCATCCATTTCATACATCCTTCACCCCATTGTCACACACTTCCATGCATCCGTTGATCTGTTACTTCGTGATAGATTTGGATTTATCATTTATTTATTTTCAAATTGGCAGCTAGATGCATTTTTACGTTTATTCAAATAAATGCACAACGTTGACATTACAAAATTGATGATGCTTTTCTTTTTTCACTCTGAAGTTGATGTCTATTAATCACCTGGCACCATAAATTGGTCTAATTGCTATGCCGGCATTCTAATAGCATCTAGCCTGGTTTTGTGTGTGAGACTGGACTTATTTGCCTTGTTCAACGTATGTATCTGGCATTTTACCTTGTTACTTAAAC

Ace file of the UniGene sp_v1.1_unigene6045

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cell division control protein 48 homolog D n=9 Tax=core eudicotyledons RepID=CD48D_ARATH	-	-	86%
FL-Next	sp=Cell division control protein 48 homolog E; Arabidopsis thaliana (Mouse-ear cress).	-	-	90%
Blast2go	transitional endoplasmic reticulum	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	94%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	94%
Blast2go	Thiamine metabolism	00730	94%
Blast2go	Metabolic pathways	01100	94%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	94%
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	94%
Blast2go	nucleolus	GO:0005730	Cellular Component	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%
Blast2go	cell wall	GO:0005618	Cellular Component	94%
Blast2go	cytosol	GO:0005829	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Blast2go	CDC48, N-terminal subdomain	IPR003338	-	94%
Blast2go	AAA+ ATPase domain	IPR003593	-	94%
Blast2go	ATPase, AAA-type, core	IPR003959	-	94%
Blast2go	ATPase, AAA-type, conserved site	IPR003960	-	94%
Blast2go	CDC48, domain 2	IPR004201	-	94%
Blast2go	ATPase, AAA-type, CDC48	IPR005938	-	94%
Blast2go	Aspartate decarboxylase-like fold	IPR009010	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LZF6

Fln msg:

Fln protein: MASLIPGESSEGKGTKKDFSTAILERKKSPNRLVVDEAINDDNSVVALNSKTMETLQLFRGDTILVKGKKRKDTVCIVLADDTCEEHKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDVYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKIIETDPGEYCVVSPDTEIFCEGEPIKREDEDRLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEDVDLERISKNTHGYVGADLAALCTEAALHCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQAALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARQSAPCVLFFDELDSIATQRGSSAGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRFQIFKACLRKSPVAKDVEIVTLAQYTQGFSGADITEICQRACKYAIREHIEMDIERERKRKENPEAMDEDETEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFTDQIITTTGSAGTTDALVTQRAVDDDDLYS*

Protein Length: 811

Fln nts: ATGCGAACCATCAGACCTCATTAATTTCTGCGGAGATCTTCTTCTGCATCTTTCTCTTCTCTGTGGTTGTTCCCTTTCTATCATTTCATCCTTTAAAATCTACG_-_ATGGCGAGCTTAATACCTGGAGAATCATCTGAAGGGAAGGGAACAAAGAAAGACTTTAGCACTGCAATACTTGAGCGTAAGAAGTCTCCTAATCGGTTAGTTGTGGATGAAGCCATAAATGATGATAACTCGGTTGTGGCTCTTAATTCGAAAACAATGGAAACATTGCAGCTTTTCCGGGGTGATACCATTCTTGTTAAGGGTAAAAAGAGAAAGGATACAGTTTGCATTGTTCTGGCTGATGATACCTGTGAAGAGCATAAGATCAGAATGAACAAAGTTGTTAGGTCAAATCTAAGAGTAAGATTAGGGGATGTAGTATCTGTTCATCAGTGCCCAGATGTTAAGTATGGGAAGCGTGTGCATATTCTTCCTATAGATGACACAATTGAAGGTGTTACAGGAAACTTGTTCGATGTGTACTTGAAGCCTTACTTCTTGGAAGCCTATCGCCCAGTAAGAAAAGGAGACCTTTTTCTAGTACGAGGAGGAATGAGAAGTGTAGAATTTAAAATCATTGAGACAGATCCTGGTGAGTATTGTGTTGTTTCTCCAGATACTGAAATTTTTTGTGAGGGAGAGCCAATAAAACGAGAAGATGAAGACAGATTGGATGACGTTGGCTATGATGATGTTGGTGGTGTAAGGAAACAAATGGCACAGATCAGAGAACTAGTTGAATTACCACTAAGGCATCCACAACTTTTCAAATCCATTGGTGTTAAGCCCCCTAAGGGTATTTTGCTTTATGGTCCTCCTGGTTCAGGAAAAACCTTGATTGCTAGGGCAGTGGCAAATGAGACTGGAGCTTTCTTTTTTCTAATTAATGGTCCTGAAATTATGTCAAAGCTTGCTGGAGAAAGTGAAAGCAATCTTAGAAAGGCTTTTGAAGAAGCAGAGAAGAATGCCCCTTCTATCATTTTCATTGATGAAATTGACTCCATAGCTCCAAAGAGGGAGAAAACAAATGGTGAAGTAGAGAGGCGCATTGTATCTCAACTATTGACATTGATGGATGGTCTAAAATCTCGATCTCATGTGATTGTCATGGGAGCAACAAATAGGCCTAACAGCATTGATCCAGCACTTAGAAGGTTTGGTAGGTTTGATCGTGAAATTGACATTGGGGTTCCAGATGAAGTTGGCCGACTGGAAGTTCTTCGCATCCACACAAAGAATATGAAGCTTTCTGAAGATGTTGATCTTGAACGTATTTCGAAGAATACACATGGCTATGTTGGGGCAGATCTTGCAGCTCTTTGCACTGAGGCTGCACTGCATTGTATTAGGGAAAAAATGGATGTCATTGACTTGGAAGATGAAACTATTGATGCGGAAGTTCTGAATTCTATGGCTGTTACAAATGAGCACTTTCAGGCTGCACTGGGCTCTAGTAACCCTTCTGCCCTGCGTGAGACTGTTGTGGAGGTGCCAAATGTTTCTTGGGAGGATATTGGGGGTCTGGAAAATGTCAAAAGAGAGCTTCAGGAGACTGTGCAATATCCGGTGGAACATCCAGAGAAATTCGAGAAGTTTGGTATGTCTCCCTCTAAAGGTGTTCTATTCTATGGACCTCCTGGTTGTGGTAAGACGCTTCTGGCAAAGGCCATTGCCAATGAGTGTCAGGCCAACTTTATCAGTGTGAAAGGCCCAGAGCTCCTAACAATGTGGTTTGGAGAAAGTGAAGCCAATGTGCGTGATATTTTTGATAAGGCTAGGCAGTCAGCACCTTGTGTCCTTTTTTTTGATGAGCTTGATTCGATTGCTACCCAGCGTGGTAGTAGTGCGGGAGATGCTGGGGGTGCGGCAGACAGAGTTTTGAATCAGTTGCTGACTGAGATGGATGGCATGTCTGCCAAGAAAACTGTTTTCATTATTGGAGCTACGAATCGCCCTGACATTATTGATTCGGCTTTATTACGACCTGGTCGCCTTGATCAATTAATATACATACCCTTGCCTGATGAAGCTTCCCGCTTTCAAATCTTTAAAGCATGTTTGCGGAAGTCACCTGTTGCAAAGGATGTTGAAATTGTGACTCTTGCTCAATACACACAAGGATTTAGTGGAGCTGATATTACTGAAATTTGTCAGCGTGCTTGCAAATATGCTATTAGAGAACATATTGAGATGGACATTGAAAGGGAAAGGAAAAGAAAGGAAAACCCTGAAGCCATGGATGAAGATGAAACTGAAGTTGCAGAAATAAAGGCAGCTCATTTTGAGGAATCAATGAAATATGCCAGAAGGAGTGTTAGCGATGCAGATATACGTAAATATCAAGCATTTGCTCAAACATTACAGCAATCTCGAGGTTTTGGGTCAGAATTCCGGTTCACAGATCAGATTATTACTACCACAGGCAGTGCAGGCACCACAGATGCTCTTGTTACACAACGTGCTGTTGATGATGATGATCTGTACAGTTGA___AATGGTGAATTACAGGATCACAAAATTATAGGGCTTGTAACATTTTGAGCCAGTATTCTGTGCTTAGCATTTTAACACCACACTTCTGATTCATCACCCAAGTTTCAGAATGTTTGGTATTTGTGATCTTGGTGTATACTCTTGGCATCCATTTCATACATCCTTCACCCCATTGTCACACACTTCCATGCATCCGTTGATCTGTTACTTCGTGATAGATTTGGATTTATCATTTATTTATTTTCAAATTGGCAGCTAGATGCATTTTTACGTTTATTCAAATAAATGCACAACGTTGACATTACAAAATTGATGATGCTTTTCTTTTTTCACTCTGAAGTTGATGTCTATTAATCACCTGGCACCATAAATTGGTCTAATTGCTATGCCGGCATTCTAATAGCATCTAGCCTGGTTTTGTGTGTGAGACTGGACTTATTTGCCTTGTTCAACGTATGTATCTGGCATTTTACCTTGTTACTTAAAC

Fln Alignment:

sp_v1.1_unigene6045___ESSEGKGTKKDFSTAILERKKSPNRLVVDEAINDDNSVVALNSKTMETLQLFRGDTILVKGKKRKDTVCIVLADDTCEEHKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDVYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKIIETDPGEYCVVSPDTEIFCEGEPIKREXXXXXXXXXXXXXXXXRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEDVDLERISKNTHGYVGADLAALCTEAALHCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQAALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARQSAPCVLFFDELDSIATQRXXXXXXXXXXXXRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRFQIFKACLRKSPVAKDVEIVTLAQYTQGFSGADITEICQRACKYAIREHIEMDIERERKRKENPEAMDED--ETEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF--TDQIITTTGSAGTTDALVTQRAVDDDDLYS
Q9LZF6______________ESSDSK-TKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVSNEHFHTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSGADITEICQRACKYAIRENIEKDIENERRRSQNPEAMEEDMVDDEVSEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFDSTAGVGRTTGVAAADPFATSAAAADDDDLYS

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
8	80			20	0.995493
12	80			20	0.995493
16	80			20	0.995493
18	80			20	0.995493
19		20		80	0.995493
107	80		20		0.995493
209			62	37	1.0
243		12		87	0.992554
284	10			90	0.90298
286		90	10		0.90298
287		90	10		0.90298
304		20		80	0.999996
705	85	14			0.993533
706	85			14	0.993533
712	85		14		0.993533
718	85		14		0.993533
719		14		85	0.993533
720		14		85	0.993533
726	90		10		0.90298
727		90	10		0.90298
1328	90		3	6	0.997073
1332	90	9			1.0
1334	90	3		6	0.997073
1363	93	6			0.999364
2293	88		11		0.923564
2848	88		11		0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
2510	2522	TGA TGA TGA TGA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain