SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6025

Length: 1296 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6025

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Clavata-like receptor n=1 Tax=Picea glauca RepID=Q19AV8_PICGL	-	-	5.0e-26	61%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	61%
Blast2go	cll1b clavata1-like receptor s t protein kinase protein	-	-	9.26942e-26	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	9.26942e-26	72%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	9.26942e-26	72%
Blast2go	Protein kinase-like domain	IPR011009	-	9.26942e-26	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: your sequence is shorter than subject: 153 - 998

Fln protein: CQSQAPAYTHKVNEKTDIYSFGVVLLELVTGKKPNDVEFGDYSDIVRWVRNQIHIDINDVLDAQVANSYREEMMLVLRVALLCTSTLPINRPSMREVVEMLFFCSTDERIRKEAATTLSPHLKRNPSAFRYAPPSVCTSTCPFRDLGCDLDL*

Protein Length: 154

Fln nts: CTTGCCAGTCACAAGCTCCAGCTTACACCCACAAAGTGAATGAGAAAACTGACATATACAGCTTTGGTGTGGTCCTGCTGGAGCTTGTGACTGGCAAGAAACCCAATGATGTAGAATTTGGAGATTACTCTGACATTGTTAGGTGGGTTCGCAATCAGATTCACATCGATATCAATGACGTCCTGGATGCACAAGTAGCAAACTCATATAGAGAAGAAATGATGCTGGTGTTAAGGGTGGCTCTGTTATGCACTAGCACTCTGCCCATCAACAGGCCTTCAATGAGGGAAGTTGTGGAAATGCTATTTTTCTGCAGCACAGATGAACGAATTAGAAAGGAAGCAGCTACCACTTTGTCTCCCCATCTCAAGAGGAATCCCAGTGCTTTTAGATATGCTCCCCCTTCTGTATGCACTAGCACATGTCCATTTCGTGACCTTGGTTGTGACTTAGATTTGTGA___CCTTTATCTTAATTTATAGCCGATATTAAAAGCACTGTTCAGTGATGCCCTATACCTTGCTGAAAACTGTAGGAGAATTTGATTCACAGAGAAGTACTAGATCTCTATCATACAATGGTTTTATTAGTTTGTTCCAAACAGGAGATGCATCTATCCCAGTGGAAACATTTCATCAATCCCTTGCACAGAAGCAGTTGTTATCCGCCAAATTACCAAGAACAACGTTGCAGGCAAAGAATAGATCTGTTGGGTCTTCATCAAAGGCATCAGGAGATCCACCAGCCAGATTTGGTAACAAGTTATAGGAGGGCTAGGATCTAACCCTCTCCATAGCAGCACGTATATGAGGTGTTGTTCTGTAGCATAGCCTTCATAACAAGAATCCTTTGAGTTTCACATTCCCTTTAGTGTATATAATAGGACCTTTTGGTAGCCCAACTGTGAAACATCTTATGCAGGGTACCCTGTTTTGAGATTGTTCTATCAAAGAGATGATGACAAAGTAATAGCTGAAAAACAATGCGGTATATATATCCTTGAGCTCATCATCATGGATGGGCGACTGACAGTAACTTCGCTGAATCTCATCTACCATTTAAGCGTAGTCATGAGGTTTTGCTGTCTAGTTATTGCTTTGAGTATTGTAGTGTATTTTACCCTTTAATTAGGCATCAGCAGATGAATTGTAAGCACAAAAAGTAGTAACTACCAAAGGAGGTTATACAAACAGCCTACCAGAGTCTGAAGGCTACCTCCAAGAGTCGTATGAAATAGAATAAAGTTGAGTAATTTTCATTTTGTTACTGAAAATTGTATATATAGAGAAAGTTTTACT

Fln Alignment:

sp_v1.1_unigene6025___AYTHKVNEKTDIYSFGVVLLELVTGKKPNDVEFGDYSDIVRWVRNQIH--IDINDVLDAQVANSYREEMMLVLRVALLCTSTLPINRPSMREVVEML
Q19AV8______________AYTLKVNEKSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKIEKKNGLHEVLDPKLVDCFKEEMTMVMRVGLLCTSVLPINRPSMRRVVEML

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
182	18		81		0.999994
232	22		77		0.999999
256			12	87	0.992554
315	20		80		0.995493
815		28	71		1.0
834		83	16		0.994512
927		14		85	0.993533
944		14	85		0.993533
976	16	83			0.994512
984	80		20		0.995493
1027		70		30	1.0
1067		33	66		1.0
1068		66	33		1.0
1101	33			66	1.0
1102		33		66	1.0
1103		33		66	1.0
1114			88	11	0.923564
1186	40			60	1.0
1201	80		20		0.995493
1206	60			40	1.0
1245	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain