SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6010

Length: 1044 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6010

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-directed RNA polymerase subunit n=1 Tax=Picea sitchensis RepID=D5AAK0_PICSI	-	-	98%
FL-Next	sp=DNA-directed RNA polymerase subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	dna-directed rna polymerases iii kda	-	-	74%

Source	InterPros	Term	Type	Identity
Blast2go	WW/Rsp5/WWP	IPR001202	-	74%
Blast2go	Zinc finger, TFIIS-type	IPR001222	-	74%
Blast2go	DNA-directed RNA polymerase, M/15kDa subunit	IPR001529	-	74%
Blast2go	DNA-directed RNA polymerase, subunit C11/M/9	IPR012164	-	74%
Blast2go	DNA-directed RNA polymerase M, 15kDa subunit, conserved site	IPR019761	-	74%

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
351	60			40	1.0
362		11	88		0.923564
394	88		11		0.923564
491		62		37	1.0
493		62		37	1.0
506		70		30	1.0
523	30		70		1.0
536	15	7	76		0.999983
559	18	81			0.999994
560	18			81	0.999994
561	18	81			0.999994
565	88			11	0.923564
746			85	15	1.0
849			38	61	1.0
851	61		38		1.0
857			60	40	1.0
860	63		36		1.0
873	37		62		1.0
897		70		30	1.0
906		66	33		1.0
940	40		60		1.0
958		75		25	0.996473
959		75		25	0.996473
960	75	25			0.996473
1002		75		25	0.996473
1023		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain