SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6007

Length: 1399 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6007

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase 72, putative n=1 Tax=Ricinus communis RepID=B9S693_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	peroxidase 72	-	-	79%

Source	InterPros	Term	Type	Identity
Blast2go	Plant peroxidase	IPR000823	-	79%
Blast2go	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	79%
Blast2go	Haem peroxidase	IPR010255	-	79%
Blast2go	Peroxidases heam-ligand binding site	IPR019793	-	79%
Blast2go	Peroxidase, active site	IPR019794	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPA0

Fln msg:

Fln protein: MAKTFSSCLALSPICSPQAYFFVLSLLLSYGYSQAALVPNFYANSCPKAEEIVKSVVENAVMKEARMAASLIRLQFHDCFVQGCDASLLLDNSSKIVTEKGSNPNNNSARGFTVVDQIKSALEAACPKTVSCADILALAARDSVVLTGGPTFPVFLGRRDSTTASLSGSNNNIPAPNSTLQSLITKFKRQGLDVVDLVALSGSHTIGQSRCTSFKQRLYNQSGNGQPDSTLDKPYYAELKTRCPKSGGDNNLFPLDFVSPTKFDNYYFKHLVSGDGLLNSDEELYAKGKGKTKELVEAYAENEEAFLKQFAISMVKLANIKPLTGTNGEIRVNCRRVLG*

Protein Length: 341

Fln nts: ATGGGGATAATCAATCGAGCACAGCAAGCTTTGCTGTTCTTTCTTTGGTGGGTTGATACGAAGATTAATTCATTTCATATTATTCAGAATCAATC_-_ATGGCCAAAACTTTTTCCTCTTGCCTTGCTCTTTCACCAATTTGCTCTCCACAGGCGTATTTCTTCGTATTATCATTGTTATTATCCTATGGGTATTCTCAAGCTGCTTTGGTTCCAAATTTTTATGCCAATTCATGCCCCAAGGCCGAGGAAATAGTGAAATCAGTAGTAGAAAATGCCGTGATGAAGGAAGCTCGAATGGCAGCGTCCTTAATCAGGCTTCAATTCCATGATTGCTTTGTCCAGGGGTGTGACGCATCTTTGCTGCTGGATAACAGTTCAAAAATTGTGACTGAGAAGGGATCAAATCCCAACAATAACTCTGCTAGGGGATTTACAGTCGTTGATCAGATTAAGAGTGCACTGGAGGCGGCGTGCCCAAAAACTGTATCCTGTGCAGATATTCTCGCTCTTGCAGCTCGTGACTCAGTGGTTCTAACTGGAGGTCCGACCTTTCCGGTTTTTCTGGGAAGGAGAGACTCGACGACTGCAAGCTTGAGTGGGTCCAACAACAATATCCCAGCGCCCAACTCAACTCTCCAAAGTCTCATTACCAAGTTTAAGCGACAGGGTCTGGATGTTGTAGACTTGGTTGCCCTCTCAGGAAGTCACACCATCGGCCAATCTCGATGCACAAGTTTCAAGCAAAGGCTTTACAACCAGAGTGGAAATGGGCAGCCAGACTCCACTTTAGACAAACCCTACTATGCTGAGCTCAAAACCAGGTGTCCCAAATCCGGAGGAGATAATAACCTGTTTCCACTAGATTTCGTGAGTCCAACCAAATTCGACAACTACTACTTCAAGCACTTGGTCAGCGGGGATGGACTGTTGAACTCCGACGAAGAATTGTACGCCAAGGGCAAAGGCAAGACGAAGGAGCTAGTGGAAGCATACGCAGAAAACGAGGAGGCGTTCTTAAAGCAGTTTGCAATATCGATGGTGAAGTTGGCGAACATCAAGCCTCTTACAGGCACCAATGGAGAAATCAGGGTCAACTGTCGTCGTGTTCTCGGTTGA___TCAGTTGAATTCAGTTAATTTCCAGGTTTCGCATTGCATGGCATTACATCCCTTCATATAGATGCCAACAAAATGCATTACTAAATAATACTTTCTTGCATTACTAAATAATACTTTCTTGCGCATACAGTGTGTCACAGAGTGATAATATTGCCGCCAGTTAGATATTAGGTTTATAATTCGGTCAGACGATAGAATAACATTAGTTCAACGTCGAATACCCCGAATGGAATTGCCATGTATTCAGAAGTATCTCTAAATATTTGAAGAATAATTAGTGACGG

Fln Alignment:

sp_v1.1_unigene6007___MAKTFSSCLALSP-ICSPQAYFFVLSL---LLSYG-YSQAALVPNFYANSCPKAEEIVKSVVENAVMKEARMAASLIRLQFHDCFVQGCDASLLLDNSSKIVTEKGSNPNNNSARGFTVVDQIKSALEAACPKTVSCADILALAARDSVVLTGGPTFPVFLGRRDSTTASLSGSNNNIPAPNSTLQSLITKFKRQGLDVVDLVALSGSHTIGQSRCTSFKQRLYNQSGNGQPDSTLDKPYYAELKTRCPKSGGDNNLFPLDFVSPTKFDNYYFKHLVSGDGLLNSDEELYAKGKGKTKELVEAYAENEEAFLKQFAISMVKLANIKPLTGTNGEIRVNCRRV
B8LPA0______________MANTISRRLTLLQLVCSLQAFFISFSFGHPLPHPGHYPVSSLIPHYYAKSCPRAEQIVASVVQKAVMKETRMAASLLRLHFHDCFVKGCDASLLLDDSGSIVSEKRSNPNRNSARGFEVVDQIKSALEQACPKTVSCADILAISVRDSVVLRGGLGWEVLLGRRDSKSASLSGSNNNIPAPNSTLQTLTTKFNLQGLNEVDLVALSGSHTIGLSRCTSFRQRLYNQSGNGQPDFTLDKSYATQLKSGCPKSGGDNNLFPLDFVSPTKFDNYYFKNLLSGHGLLNTDEELFSKGQAKTRKLVKEYAENEELFLKQFALSMVKMGNIKPLTGSNGEIRVNCRKV

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
12	66		33		0.997452
13			33	66	0.997452
14		66	33		0.997452
119		33		66	0.997452
297		11		88	0.923564
614	87		12		0.992554
788		12		87	0.992554
790	87			12	0.992554
818	83			16	0.999991
819		83	16		0.999991
820		83	16		0.999991
821	83		16		0.999991
1058	85		14		0.999981
1255		80		20	0.995493
1340		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain