SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5999

Length: 1904 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5999

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DCP1; DCP1 (decapping 1); m7G(5')pppN diphosphatase/ protein homodimerization	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	dcp1-like decapping family protein	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:3.6.1.3-	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	deadenylation-independent decapping of nuclear-transcribed mRNA	GO:0031087	Biological Process	66%
Blast2go	m7G(5')pppN diphosphatase activity	GO:0050072	Molecular Function	66%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	66%
Blast2go	cytoplasmic mRNA processing body	GO:0000932	Cellular Component	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQS3

Fln msg:

Fln protein: MSQNGKIIPQLSQQVTNDSNLTVLQRIDCHVEEILATAGHVTLYDFNMELSQWSRKDVEGPLFVVKRRTQPRFQFIVMNRRSAENLVEDLLSDFEYEINLPYLLYRNANQEVIGIWFYDPRECDEVVKLFSRILNAFSKVPPKPKVFTNQSNEFQELESVPTSATIEGPLEPPSSTSAITEASEEPLERFFSASLHLSSRPELSSLTSVRSSTMTHPLPARSTSVSSTTLIPMPVSSPPLPASSVSLIHMAARPLDVTEVSSNSHATLVKPSFFVPQPSSSAPMPLSLSTAPMAPPLNPLPPLQPSYGAPLLQPFPPPAPSQSLAPASTVSQGPVITRDKVRDTLARLVQNEHFIDMVYREMLNALPS*

Protein Length: 370

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCAAAGTTAACTGCACGGAAAGAATACGATGCCATAACATTCCCGACTGAGTGAATGACTGGCAGTGGTCTTTGCTTCCCTATCCAGAAAGCTAGGCCGCCATTATGAGAAGAGACGAATGCTCGGATGATTGGTGAATCGACGACAGGTAAAACAAGCGAAGTCCAGGGAAGGAACAGAAGCTTCAGCACAGGCAATAGGCCAA_-_ATGTCTCAGAACGGTAAAATAATCCCCCAGTTGAGCCAGCAGGTCACCAATGACTCCAACCTCACGGTTCTTCAGCGGATCGACTGCCATGTCGAAGAAATTCTCGCCACCGCCGGCCATGTCACTCTCTACGACTTCAACATGGAGCTCAGCCAATGGAGTCGCAAGGATGTCGAGGGACCTCTATTTGTTGTCAAGAGGAGGACCCAGCCACGGTTTCAGTTCATCGTTATGAACCGGCGTAGTGCGGAGAATTTGGTGGAGGATCTACTCAGCGATTTTGAATACGAAATAAATCTTCCTTATTTACTCTATCGAAATGCAAACCAGGAAGTGATTGGAATTTGGTTTTATGATCCAAGAGAGTGTGACGAGGTTGTAAAGCTTTTCTCCAGGATTTTGAATGCTTTCTCGAAGGTTCCTCCCAAACCAAAAGTATTCACAAATCAAAGCAATGAGTTTCAAGAGCTGGAGTCAGTACCTACGTCAGCAACTATAGAGGGTCCTTTGGAGCCTCCTTCATCAACATCAGCCATTACAGAGGCCTCAGAAGAGCCCCTTGAGCGTTTTTTTAGTGCATCATTACATTTAAGCAGCCGCCCAGAACTGTCATCCTTGACTTCTGTGAGATCGTCAACCATGACACACCCCTTGCCAGCACGTTCAACATCAGTTTCTTCAACCACACTAATTCCAATGCCAGTATCATCTCCTCCACTACCTGCTTCGTCAGTGTCATTAATTCACATGGCTGCTCGTCCCTTAGATGTAACTGAAGTCAGCAGCAATAGTCATGCCACACTTGTCAAGCCTTCCTTCTTTGTGCCACAACCTTCTTCATCTGCACCGATGCCACTATCTCTTTCTACTGCACCAATGGCTCCACCTCTAAATCCGCTTCCACCACTGCAGCCTTCATATGGCGCACCACTACTTCAACCTTTCCCTCCTCCCGCTCCTTCCCAGTCACTTGCCCCAGCTTCAACTGTGAGCCAAGGCCCAGTTATTACAAGGGATAAAGTGCGGGATACACTGGCTCGGTTGGTACAGAATGAGCATTTTATAGACATGGTGTATCGTGAGATGCTGAATGCACTACCTTCATGA___AGATTCCACATCAAATAGTTCATATATCAACTTCAGCTTACTCGCTCACCAGTAGGAGGGTTTTACACATTCTTTTCTTGGATCTGCCCAGCATATTCTGTTGAGCCCCAAGTTCAGCCTCACAGGTTGCAATTTGCAAATTCTAAAAGTGCCAGTTTCGTTTCGTATCTTGAAGACATTATGCAATATGTTGATTTGTCTTGTCTAAGTAAATATGATCATTTCGTTTGCACAGAAAGACACCTCTACTACATATATTGCATTTCAAAGGTTGTTATTTGTCTCATAGTCATGTTCACTTCTTATCTAGGAGTGGAGTATTGGCCGTATTTTGGAAAATTCAGTGATCGTCCTTGTACATTTCCATTCAGAAAAACTGACGGAATCCCGTTCTAGGAAATCTTTTGCAATGGAGAAATGGAAATTAAGAAATGTACTGTTTACTAGATGTATCCTAAAATTTTGAGACGTCTTCATGCCATACGGTTGTTGATCTGGTCTATTGATTTATTAGATGCAAGTTGGCAGTGCTGGTGTCTTTTGCAGGTCTTCATAGTTACCTGTTC

Fln Alignment:

sp_v1.1_unigene5999___MSQNGKIIPQLSQQVTNDSNLTVLQRIDCHVEEILATAGHVTLYDFNMELSQWSRKDVEGPLFVVKRRTQPRFQFIVMNRRSAENLVEDLLSDFEYEINLPYLLYRNANQEVIGIWFYDPRECDEVVKLFSRILNAFSKVPPKPKVFTNQSNEFQELESVPTSATIEGPLEXXXXXXXXXXXXXXXLERFFSASLHLSSRPELSSLTSVRSSTMTHPLPARSTSVSSTTLIXXXXXXXXXXXXXXXXIHMAARPLDVTEVSSNSHATLVKPSFFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYGXXXXXXXXXXXXXXXXXXXXTVSQGPVITRDKVRDTLARLVQNEHFIDMVYREMLNALPS
B8LQS3______________MSQNGKIIPQLSQQVTNDSNLTVLQRIDCHVEEILATAGHVTLYDFNMELSQWSRKDVEGPLFVVKRRTQPRFQFIVMNRRSAENLVEDLLSDFEYEINLPYLLYRNANQEVIGIWFYDPRECDEVVKLFSRILNAFSKVPPKPKVFTNQSNEFQELESVPTSATIEGPLEPPSSTSAITEASEEPLERFFSASLHLSNRPELSSLTSVRSSTMTHPLPARSTSVSSTTLTPMSVSSPPLPASSVSLVHMAARPLDVTEVSSSSHATLVKPSFFVPQPSLSTSMPLSLSNAPMAPPLNPLPPLQPSYGAPLLQPFPPPAPSQSLAPASTVSQGPIITRDKVRDTLARLVQNEHFIDMVYREMLNALPS

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
150	33	66			0.997452
152		66	33		0.997452
297	80		20		0.995493
762	83			16	0.994512
796	90	10			0.90298
797		40	60		1.0
800	40		60		1.0
802			12	87	0.992554
803	12			87	0.992554
804		12		87	0.992554
805		12		87	0.992554
808	87		12		0.992554
886	11			88	0.923564
889		88	11		0.923564
1138		87	12		0.992554
1139		87		12	0.992554
1141		87	12		0.992554
1176		16		83	0.994512
1379			10	90	0.90298
1392	81			18	0.999994
1398	90			10	0.90298
1399		20	80		0.999996
1401		10	90		0.90298
1520		41		58	1.0
1606		90	10		0.90298
1607	90	10			0.90298
1609			11	88	0.923564
1613	85	14			0.993533
1614	85			14	0.993533
1615		14	85		0.993533
1616	14		85		0.993533
1770		10		90	0.90298
1826	80			20	0.995493
1849		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain