SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5991

Length: 1205 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5991

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CENP-C; CENP-C (CENTROMERE PROTEIN C)	-	-	2.0e-26	43%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	59%
Blast2go	cenp-c	-	-	1.52206e-27	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	chromosome, centromeric region	GO:0000775	Cellular Component	1.52206e-27	65%
Blast2go	nucleus	GO:0005634	Cellular Component	1.52206e-27	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7U0P0

Fln msg: your sequence is shorter than subject: 266 - 899

Fln protein: GDKDEEALKDATSNPSKQGRSSGVRRLSFGGASQSPDLAVVNSKEGVNDVMAMDLMNFRSPSKQFGEDDEVEMVRGDVDFSNEIVLIPERSTPVSSSGPTNCNAVGSEHPVNDAPGSAIGQQVEESPVAFHKRNAKKIKRQSKNNATTSNCDVREGDQIVSKGIEDNRKNKKKSDYQRRQSLAGAGTLWKSGVRRSTRIRSRPLEYWRGERFLYGRIHSSLATVIGIKYSSPLPARPKSDQVPKLKVQSFVDEQYSHLVEFAALH*

Protein Length: 267

Fln nts: ATGGGGATAAGGATGAAGAGGCACTCAAAGATGCCACTTCAAACCCTTCAAAGCAAGGGCGGAGCAGTGGGGTAAGAAGATTGAGTTTTGGTGGTGCTTCTCAATCACCAGACCTTGCTGTAGTTAACAGCAAGGAAGGTGTCAATGATGTCATGGCCATGGATTTGATGAATTTTAGATCTCCTTCCAAGCAATTTGGGGAGGATGACGAGGTAGAAATGGTGAGAGGTGATGTAGACTTCTCAAATGAAATTGTCTTGATCCCTGAAAGGAGCACTCCAGTGAGCAGTAGTGGACCAACTAATTGCAATGCAGTTGGATCAGAACATCCTGTGAACGATGCTCCTGGTTCTGCAATAGGGCAGCAAGTTGAAGAATCTCCAGTAGCATTTCACAAAAGAAATGCCAAAAAGATTAAAAGGCAATCCAAGAATAATGCAACTACAAGTAATTGTGATGTTCGTGAGGGAGATCAAATTGTATCCAAGGGAATTGAAGATAACAGAAAGAACAAGAAAAAATCTGATTATCAACGTCGACAAAGTCTTGCAGGGGCAGGGACTTTATGGAAAAGTGGGGTAAGGCGGAGTACAAGAATAAGATCAAGACCTTTAGAGTATTGGAGAGGCGAAAGGTTCTTATATGGTCGTATACATAGTAGTCTGGCAACAGTGATTGGAATAAAATATTCTTCTCCGCTTCCTGCGAGGCCTAAAAGTGATCAAGTTCCAAAGCTGAAGGTTCAATCATTTGTAGATGAACAATATTCTCACTTGGTGGAATTTGCAGCATTGCACTGA___GATTATTCTATTCATTTATGTCATATTGGGAAGGCGATATTCTATTGCTTGACAGTTTGTCTATGCTTTATCTGATCGAATGGCCTCGTATGGTCTGTCAAGATCACTGGAATGCTTCTCATCTAGATGCCTGCTGTGGACTTAGTTCTATTCGAAATCAACGCTCTCTTTTGGTACAATGTGTAAAATCTTGAGGAAATAAACACGCAAAATTGCAGGGATGATTTTATTATGTAACATTCATGAATTTGAAGGCTAACCAAGTTTCAATTCTGGCCAATCTCTCTATGGCCTCTATGTAAATACTTGTGGAGAATGGATAGCTATCTTAATGTGCAATTTGTTGTTGAGTTGTGCTTAGTTAATATTGAGTTAAGCCCGTCCAGAATACTAATAATGTGCTCG

Fln Alignment:

sp_v1.1_unigene5991___SKGIEDNRKNKKKSDYQRRQSLAGAGTLWKSGVRRSTRIRSRPLEYWRGERFLYGRIHSSLATVIGIKYSSPLPARPKSDQVPKLKVQSFVDEQYSHLVEFAALH
D7U0P0______________SKAKTPPRRERKRKEISGRQSLAGAGTLWSSGVRRSTRIKMRPLEYWKGERFLYGRVHKSLTSVIGVKYVSP----AKGDGKPTIKVKSYVSDEYKELVDLAALH

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
92		20		80	0.995493
93			80	20	0.995493
121	20			80	0.995493
123			80	20	0.995493
130			60	40	1.0
138		16	83		0.994512
143		83	16		0.994512
145	83	16			0.994512
146		16		83	0.994512
147			83	16	0.994512
151			16	83	0.994512
153	66		16		0.988813
154		16		83	0.994512
155	16		83		0.994512
156			83	16	0.994512
158	16	83			0.994512
159	66	16		16	0.988813
161		16	83		0.994512
162	16		83		0.994512
163	83			16	0.994512
182		16		83	0.994512
191	40		60		1.0
198	20		80		0.995493
210	20		80		0.995493
211	80		20		0.995493
215	80	20			0.995493
230		20		80	0.995493
231	20		80		0.995493
253		20		80	0.995493
260			80	20	0.995493
271	25		75		0.996473
295	25		75		0.996473
323	75		25		0.996473
343		75		25	0.996473
351		25		75	0.996473
357	75			25	0.996473
369	25		75		0.996473
395	75		25		0.996473
402	66		33		0.997452
421	75			25	0.996473
424		75	25		0.996473
743		25	75		0.996473
744			25	75	0.996473
748	75		25		0.996473
750		75	25		0.996473
752		33		66	0.997452
753		33		66	0.997452
757	66		33		0.997452
759	66	33			0.997452
763	66			33	0.997452
766	66	33			0.997452
936		83		16	0.999991
1067			12	87	0.992554
1127			80	20	0.995493
1142	20			20	0.99255
1144	40			60	1.0
1147			20	80	0.995493
1148			80	20	0.995493
1183		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain