SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5970

Length: 291 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene5970
CTAAAGTAACTCCTTTAGTCGAGGGATATGGAGGATGGGCCTTGCGAATGGAAGTTGTACCAATAGAATCTGCATACCCTGGATTTGGTGAACTTGTGGTACTCGATGGTACAGATCATATCAATTCGTGCAAACCTGTTAGCCGTGCAGATCCAGCATATAATGAAGTGCTTCATTTTCTGCAGACATTACAGAGAAAGCTCTAGTTCCATCCAAATAGGGTCTCAAATGTATAGGCATTTTCATCATTTCATTTGTTATTCTTTTTAAATTATAAAATCAAGTTTGATA

Ace file of the UniGene sp_v1.1_unigene5970

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	80%
Blast2go	binding protein	-	-	1.97128e-25	87%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D8RS47

Fln msg: your sequence is shorter than subject: 68 - 1059

Fln protein: KVTPLVEGYGGWALRMEVVPIESAYPGFGELVVLDGTDHINSCKPVSRADPAYNEVLHFLQTLQRKL*

Protein Length: 69

Fln nts: CTAAAGTAACTCCTTTAGTCGAGGGATATGGAGGATGGGCCTTGCGAATGGAAGTTGTACCAATAGAATCTGCATACCCTGGATTTGGTGAACTTGTGGTACTCGATGGTACAGATCATATCAATTCGTGCAAACCTGTTAGCCGTGCAGATCCAGCATATAATGAAGTGCTTCATTTTCTGCAGACATTACAGAGAAAGCTCTAG___TTCCATCCAAATAGGGTCTCAAATGTATAGGCATTTTCATCATTTCATTTGTTATTCTTTTTAAATTATAAAATCAAGTTTGATA

Fln Alignment:

sp_v1.1_unigene5970___KVTPLVEGYGGWALRMEVVPIESAYPGFGELVVLDGTDHINSCKPVSRADPAYNEVLHFLQTLQRKL
D8RS47______________KVTPLVEGYGGWALRMEVVPIESAYPGFGELVVLDGTDHVNSCKPLSPSDPAYTKTLEFLRRIQVKI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
95	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain