SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5962

Length: 1397 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5962

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	81%
Blast2go	arid bright dna-binding domain-containing protein	-	-	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6I0B5

Fln msg: your sequence is shorter than subject: 181 - 578

Fln protein: SGRARRDAAARAMQGWHSQRLLGNGEVGDPIVKDKNSVSVTKREKQLKSIGMLKRKKTSTIERAVKAARTKTVNPQTDSMVVDVGPQADWVKVNVHRTRDCFEVYALVPGLLREEVRVQCDPVGRLVISGDPEQPDNPWGVTPFKKVISLPSRIDSHQTSAVVTHHGQLFVRVPFEQSEL*

Protein Length: 182

Fln nts: CGTCAGGAAGAGCCAGAAGAGATGCAGCTGCTCGAGCTATGCAGGGATGGCACTCACAGCGACTCTTGGGTAATGGTGAGGTTGGTGATCCTATTGTTAAGGATAAAAACTCTGTCTCTGTGACCAAACGAGAGAAACAACTGAAGAGCATTGGCATGCTAAAAAGGAAGAAAACATCAACTATAGAGCGGGCTGTAAAAGCTGCACGTACAAAAACAGTAAATCCCCAAACGGATTCAATGGTTGTGGATGTTGGACCTCAAGCAGATTGGGTGAAGGTCAATGTGCACAGAACTAGGGACTGCTTTGAGGTCTATGCTTTAGTGCCTGGGCTTCTTCGTGAAGAGGTTCGTGTCCAGTGTGATCCAGTAGGCCGCTTGGTTATTTCTGGTGACCCAGAGCAACCTGACAATCCATGGGGAGTAACGCCTTTCAAGAAGGTAATCAGCTTGCCATCAAGGATTGATTCACATCAAACATCAGCAGTGGTCACTCATCATGGTCAATTATTTGTTCGTGTCCCTTTTGAGCAGTCTGAGTTGTAG___CGTGAGTGGTATCATGTTTAGTTTCCTGTTTTATTGGTTAGAGCATGTCAAGTTGGAAGGAAGAGCCTTATGGGAACGCTATATTCAAGGAGCTGAACTTACCGTACAAGAACAAATGGGTGCAATTTTGAGCAAGAAAAATCAAGCAGGAAGAAAAATAGCTTCTCTCGATTTTGAGGAATTTTCCCTGCAACATTTGACAAGGAAGGTGGAGATCACTACCTTTTTAGTATTTACACCTGATTAATCAAGGAAGGAAGCTATTAGAGGCCACATGGTAGCTTTTCGGAAAACCATGGAACTGGATGAAATAGAACTCTTGTTCTGGTTGCCCCTGTATCTGTATTATAATTTTAGGGCTTGTAATTCCCGTGGCATACCAAATAGCCTTTTGTGTCTATTCTTCTTTAATATAATGTAGTGGCATGTGGATTTCTAAAAGGATGTAATGTAGCGCACCAGGAAAAGGGGTTTAATGCAAAGTAGTGATCTCTTCACCGTCCAGAGAGTGATCGTGCACTGTTTTTAATTTAGTCGTAATATTTGATACATGATGCTTCTCGACCTCAGGTAAAGAAGGCTGACTTTTCGGTCAGTACCAACCCTTCATACTGAGTTAAGGCAGGGAGAGAATTTTTCTTTGTGATTTGAGAAGTGTTGATGTTGGGATATTGTCGCCTATTAATTTTAACCAGTGTTGAATGGTTGCAAGCAACTGTGTCCGCACTAGAACAGTACGGCCTTACACGGATGTTTATTTCAAATTTTATTTTCTATATAGGTCCGACAACTTTGATCGTCATATCCCGATTTGTACTCATTAGAAAAATATTTAAAAATCTCATTAAAACC

Fln Alignment:

sp_v1.1_unigene5962___MQGWHSQRLLGNGEVGDPIVKDKNSVSVTKREKQLKSIGMLKRKKTSTIERAVKAARTKTVNPQTDSMVVDVGPQADWVKVNVHRTRDCFEVYALVPGLLREEVRVQCDPVGRLVISGDPEQPDNPWGVTPFKKVISLPSRIDSHQTSAVVTHHGQLFVRVPFEQSE
F6I0B5______________MQGWHSQRLLGNGEVGDPIIKDKSSISLQKREKQLKNIGLLKRKKPSNLEHAVKAARTKAAKPQLDTAVVDIGPPADWVKINVRRTKDCFEVYALVPGLLREEVRVQSDPAGRLVITGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSD

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
570		10	90		0.90298
571	10			90	0.90298
572			10	90	0.90298
573			10	90	0.90298
576	10			90	0.90298
577		10	90		0.90298
579			10	90	0.90298
580	10			90	0.90298
581			10	90	0.90298
583		10		90	0.90298
586		10	90		0.90298
726	88		11		0.923564
1078	61		33		1.0
1222		12		87	0.992554
1314	16			83	0.994512
1337		40	60		1.0
1349		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain