SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5961

Length: 1355 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5961 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein-L-isoaspartate O-methyltransferase n=1 Tax=Picea sitchensis RepID=A9P2J7_PICSI	-	-	97%
FL-Next	sp=Protein-L-isoaspartate O-methyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	aging	GO:0007568	Biological Process	75%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	75%
Blast2go	seed germination	GO:0009845	Biological Process	75%
Blast2go	response to salt stress	GO:0009651	Biological Process	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	IPR000682	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2J7

Fln msg:

Fln protein: MSWTCHGKTNKDMVAKLHEYGILHSKVAADAMIQIDRADYVLDRRSAYIDSPQPIGYNATISAPHMHAYCLDYLSEHLKPGNRVLDVGSGSGYLAAVFALMVGETGRTVGVEHISQLVDRSIESIKKGPAAHLLDKGALSIHVGDGKKGFPDEAPYDAIHVGAAASEVPEALVNQLKPGGRIVIPVVDSLMIIDKLADGTLKQKSVMDVRYVPLV*

Protein Length: 217

Fln nts: ATGGGGCTTTTGCGCTTCTTTGATAGATTCTCGAAACGGATGGACCAGAACGTTCATCTGTTACATAAGTTCGTTGCTGCTCTAAACCCTAGTACGGCCCTGCATAAATCCATCCAACCTACGCCATTACAGTTCTTCTGATAAGTGTAAAGCCCCGAAACCCCTTGATTTCGAATAGTGACAGTGATTTTTGAGACCAATTTGAGCAATCTGCCCCCGAAGTATTTAGAAGATTTCGAAATTAAATCTCCGAG_-_ATGAGCTGGACGTGTCATGGCAAGACCAACAAGGACATGGTTGCCAAATTACATGAATATGGAATCCTTCACTCGAAAGTTGCAGCTGATGCCATGATACAAATTGATCGAGCAGATTATGTTCTAGATCGGAGAAGTGCTTATATTGACTCTCCACAGCCTATAGGTTACAATGCGACTATATCCGCTCCGCATATGCATGCGTACTGTCTTGATTATTTGTCAGAGCATCTTAAGCCAGGCAATCGTGTACTTGATGTTGGCTCTGGTTCTGGGTACTTAGCTGCTGTTTTTGCACTTATGGTTGGAGAGACAGGAAGAACTGTGGGAGTGGAACACATTTCTCAGCTAGTGGACAGGTCTATTGAATCGATAAAGAAGGGACCTGCTGCTCATTTGTTAGACAAAGGAGCTCTTTCCATTCATGTGGGTGATGGGAAGAAGGGTTTTCCAGATGAAGCACCTTATGATGCTATCCATGTAGGTGCAGCAGCTTCAGAAGTACCGGAGGCTCTGGTAAATCAGCTAAAGCCAGGAGGAAGAATAGTGATTCCAGTTGTTGATTCCCTGATGATTATAGACAAACTTGCTGATGGAACACTAAAACAGAAATCTGTAATGGATGTCAGATATGTTCCTCTTGTATAA___GTATTTATGATGCTTTGCCTTCGTCTACTATATTATTGAATTTGGTCTTCGCAGTCTGGACTTGTACAAGGGTTCTTGTACATATGATATTATTACATATAAATATATAATATGTTTTGGTATGTAGAGAATCTATTTTACTCATGTATTAAGTTTACTTTGTTTCAATAATGTCATGTGAATGTATGGCCACTTTATTGAGCTATTTTGTTGTTGGAGCAAGCATGGAACTCCAAGTTAACGTAATTTTTATATCGTGTGAGCTTTATGTCAGCAGAGATTATTCTTAGTGGTTAATAAATTTGTTGCTGTTTAAACATTTAAAAGGTTAAGGTTGTTGGTTGGTTAAATCAAAATGACCAACCTAAGGTGTTATAAAATGTTGGTGTTATAAAATGTTGTTCTCAGTGATGATTGCCTTTAGCGAGTGGTATTTGTAATATAGGAAGCCTA

Fln Alignment:

sp_v1.1_unigene5961___MSWTCHGKTNKDMVAKLHEYGILHSKVAADAMIQIDRADYVLDRRSAYIDSPQPIGYNATISAPHMHAYCLDYLSEHLKPGNRVLDVGSGSGYLAAVFALMVGETGRTVGVEHISQLVDRSIESIKKGPAAHLLDKGALSIHVGDGKKGFPDEAPYDAIHVGAAASEVPEALVNQLKPGGRIVIPVVDSLMIIDKLADGTLKQKSVMDVRYVPLV
A9P2J7______________MSWTCHGKTNKDMVAKLHEYGILQSKVAADAMIQIDRADYVLDRRSAYIDSPQPIGYNATISAPHMHAYCLDYLSDYLKPGNRVLDVGSGSGYLAAVFAIMVGETGRTVGVEHISQLVDRSIESIKKGPAAHLLDKGALSIHVGDGKKGFPDEAPYDAIHVGAAAS-VPEALVNQLKPGGRIVIPVVDSLMIIDKNADGTLKQKSVMDVRYVPLV

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
173	33			66	1.0
674		90	9		0.999872
675		90		9	0.999872
676		90	9		0.999872
680			9	90	0.999872
681		9	90		0.999872
682	90	9			0.999872
684	9			90	0.999872
687	90			9	0.999872
688	85	9	4		0.999726
832	89	10			0.999919
833		10	89		0.999919
834	89	10			0.999919
836		89		10	0.999919
1030		88		11	0.923564
1140		87	12		0.992554
1141	12		87		0.992554
1143			87	12	0.992554
1145	12		75		0.975346
1149	87	12			0.992554
1150		12		87	0.992554
1151	12			87	0.992554
1153		87	12		0.992554
1157	87	12			0.992554
1158	87		12		0.992554
1159	12			87	0.992554
1160		12		87	0.992554
1206	14		85		0.993533
1311	6	81	12		0.999943
1312	12	6		81	0.999943
1315			12	81	0.999943
1324		18		81	1.0
1325	20			80	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain