SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5958

Length: 959 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5958

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thioredoxin, putative	-	-	1.0e-16	38%
FL-Next	sp=Thioredoxin-like 4, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	39%
Blast2go	protein	-	-	3.43122e-18	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	3.43122e-18	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Thioredoxin	IPR005746	-	3.43122e-18	58%
Blast2go	Thioredoxin fold	IPR012335	-	3.43122e-18	58%
Blast2go	Thioredoxin-like fold	IPR012336	-	3.43122e-18	58%
Blast2go	Thioredoxin domain	IPR013766	-	3.43122e-18	58%
Blast2go	Thioredoxin-like	IPR017936	-	3.43122e-18	58%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
228	80	20			0.995493
230		25	25		0.995533
231			25	25	0.995533
232		20	20	60	0.99255
233	20		20	60	0.99255
372		50	50		1.0
399		50		50	1.0
454		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain