SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5957

Length: 1955 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene5957
ATGGGGATTGGGACTACATATTTCTCTTCATTTTATCCGCTCGGTGCATATCACAGTTGTTCGAATCCTAGCTGGTTCCAGGTTCAGGAAATAATCCAGCACCAGTGGGTTTTGGGAGTTCGCTTTGGTTGACAGGCACAAATGGCACAGGCAAACGGGGATAACAAACCTGGATCTCAACATACTGAAGAGCAGGTTGTCCTTGATGAAGAAATAGGTCATGTACGAGTGGTCACACTTAACAGTCCTCGTAAATTGAATATTATTACTTCAAAAGTGGTATCCCGATTAGCTGAGCTATATGAAAAATGGGAGAATGAAAATGGTGCTGAACTCATCATCATCAAGGGAACTGGGCGAGCATTTTCTGCTGGGGGGGACTTGAGGATGTTTTATGAGGGAAGGGCAGATGAATCTTGGATTGAGGTTGTTTATAGGATGTATTGGCTTCAATATCACATTCATACATACAAGAAAACCCAGGTCTCAATAGTTCATGGCATTGCGATAGGAGGAGGTGCAAGTCTTGCAGTTCCAGCAACGTTTTCAGTAGTCACGGAAAAAACTGTGTTTGCATCTCCCGAGGCTGGCTTTGGATTTCACACTGATTGCAGCTTTTCATACATTCATTCACATCTTCCAGGAAATCTTGGGGAATATTTAGCCTTGACAGGAGCACGTTTAGATGGTGCAGAGATGATTGCAATTGGTCTTGCCACTCATTATGTTCCATCTGAGAAATTGCCAGAACTTGAGAAGCGTTTAACCAGTTTGAATTCTGGAGATAAAGATGTTGTCAAAGCAACAATTGAAGAATTTTCTATTCAAGTCCAGCCTGGGGAGAAAAGCATCCTGCATAACCGTTCATTGATTGAAAAGTGCTTTTCCAAGGACACTGTAGAGGCAGTTATAGAATTTTTGGTGAACGAGAGCAATAGAGAAGGAAATGAATGGGTCAAGGAAACTATTAAGAGTTTGAAAAGATCCTCTCCAACAGGATTAAAAATGACTTTCCAATCAATTCGACAAGGGTGCAATCAAACACTATCTGAATGCCTTAAAAAGGAGTTCCGACTCACAATAAATACACTGAGGGGTGTAATATCCAATGATATGTATGAGGGTATCCGAGCTATAATGATTGAAAAAGATAACTCTCCGAAGTGGAATCCTCCTTTGGATGAAGTCACAAACGAGAAGCTAAACTTGGTCTTCAAACCATTCAATGATGAGTTTGAACTACAGCTACCAGCAGAGAACAAAATATCAAGGTGGGAAGGAAAATATGAAAGTTCAGGTTACAAAAAATAGGAGGCCGCTAGTTCTACTGTATATGGATCAGAATAAGGAAAAAGGATAATGCAAATTCTACTTACGACTTGGAGAAACGTGATCATTGGCTTCTAAGAAATCAAATATTTCATCACCATGCTGCTTGTCACTAGACCACACTCCCTTGGGCCAGGTGCAGGTGCAAGTCCTGGGTGACTTTGATGGCATAGATTTGCCCCTCATACCACAGCCGTTTAATCAAAGAGATTCTATAAGATGTATTTATTAAAAGAAAAAATATTCAACTATTAAAGAACCTCTTTAGACAGTTGAAACACTGGCTCTTTGACCACATTACCATTGATATAAAGAGTTTAGTATATTATACTTATTTACATTTCTATTTATCTTGTCACTGGCTACAGAAAAATGGTCATACTTGTTCTTTATTCCCTTCCATCAAATGTTGCACAAGGATTTGTGTGTAGTCAAAATATTAAAGCAGAAAAACACAAGAAAACTACTAGCAGAACATGCATAGAAGAATTCAGTCCAAACCAATGTATATTTTGGTTGCAGACTGACATCGATTATTATTCTACTCTGTGACATCCTATGGGTGAAGATCTTTGTAATAGTGTTTCCAAAAAGGTTGAGTTTTCGTGGACTCCAAATCTGCAAGT

Ace file of the UniGene sp_v1.1_unigene5957

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Enoyl-CoA hydratase, mitochondrial precursor, putative (EC:4.2.1.17); K05605 3-hydroxyisobutyryl-CoA hydrolase [EC:3.1.2.4]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
AutoFact	3-hydroxyisobutyryl-CoA hydrolase.	EC:3.1.2.4	-	0.0	66%

Source	KEGGs	Term	Identity
AutoFact	Valine, leucine and isoleucine degradation	00280	66%
AutoFact	beta-Alanine metabolism	00410	66%
AutoFact	Propanoate metabolism	00640	66%
AutoFact	Metabolic pathways	01100	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVZ0

Fln msg:

Fln protein: MAQANGDNKPGSQHTEEQVVLDEEIGHVRVVTLNSPRKLNIITSKVVSRLAELYEKWENENGAELIIIKGTGRAFSAGGDLRMFYEGRADESWIEVVYRMYWLQYHIHTYKKTQVSIVHGIAIGGGASLAVPATFSVVTEKTVFASPEAGFGFHTDCSFSYIHSHLPGNLGEYLALTGARLDGAEMIAIGLATHYVPSEKLPELEKRLTSLNSGDKDVVKATIEEFSIQVQPGEKSILHNRSLIEKCFSKDTVEAVIEFLVNESNREGNEWVKETIKSLKRSSPTGLKMTFQSIRQGCNQTLSECLKKEFRLTINTLRGVISNDMYEGIRAIMIEKDNSPKWNPPLDEVTNEKLNLVFKPFNDEFELQLPAENKISRWEGKYESSGYKK*

Protein Length: 391

Fln nts: ATGGGGATTGGGACTACATATTTCTCTTCATTTTATCCGCTCGGTGCATATCACAGTTGTTCGAATCCTAGCTGGTTCCAGGTTCAGGAAATAATCCAGCACCAGTGGGTTTTGGGAGTTCGCTTTGGTTGACAGGCACAA_-_ATGGCACAGGCAAACGGGGATAACAAACCTGGATCTCAACATACTGAAGAGCAGGTTGTCCTTGATGAAGAAATAGGTCATGTACGAGTGGTCACACTTAACAGTCCTCGTAAATTGAATATTATTACTTCAAAAGTGGTATCCCGATTAGCTGAGCTATATGAAAAATGGGAGAATGAAAATGGTGCTGAACTCATCATCATCAAGGGAACTGGGCGAGCATTTTCTGCTGGGGGGGACTTGAGGATGTTTTATGAGGGAAGGGCAGATGAATCTTGGATTGAGGTTGTTTATAGGATGTATTGGCTTCAATATCACATTCATACATACAAGAAAACCCAGGTCTCAATAGTTCATGGCATTGCGATAGGAGGAGGTGCAAGTCTTGCAGTTCCAGCAACGTTTTCAGTAGTCACGGAAAAAACTGTGTTTGCATCTCCCGAGGCTGGCTTTGGATTTCACACTGATTGCAGCTTTTCATACATTCATTCACATCTTCCAGGAAATCTTGGGGAATATTTAGCCTTGACAGGAGCACGTTTAGATGGTGCAGAGATGATTGCAATTGGTCTTGCCACTCATTATGTTCCATCTGAGAAATTGCCAGAACTTGAGAAGCGTTTAACCAGTTTGAATTCTGGAGATAAAGATGTTGTCAAAGCAACAATTGAAGAATTTTCTATTCAAGTCCAGCCTGGGGAGAAAAGCATCCTGCATAACCGTTCATTGATTGAAAAGTGCTTTTCCAAGGACACTGTAGAGGCAGTTATAGAATTTTTGGTGAACGAGAGCAATAGAGAAGGAAATGAATGGGTCAAGGAAACTATTAAGAGTTTGAAAAGATCCTCTCCAACAGGATTAAAAATGACTTTCCAATCAATTCGACAAGGGTGCAATCAAACACTATCTGAATGCCTTAAAAAGGAGTTCCGACTCACAATAAATACACTGAGGGGTGTAATATCCAATGATATGTATGAGGGTATCCGAGCTATAATGATTGAAAAAGATAACTCTCCGAAGTGGAATCCTCCTTTGGATGAAGTCACAAACGAGAAGCTAAACTTGGTCTTCAAACCATTCAATGATGAGTTTGAACTACAGCTACCAGCAGAGAACAAAATATCAAGGTGGGAAGGAAAATATGAAAGTTCAGGTTACAAAAAATAG___GAGGCCGCTAGTTCTACTGTATATGGATCAGAATAAGGAAAAAGGATAATGCAAATTCTACTTACGACTTGGAGAAACGTGATCATTGGCTTCTAAGAAATCAAATATTTCATCACCATGCTGCTTGTCACTAGACCACACTCCCTTGGGCCAGGTGCAGGTGCAAGTCCTGGGTGACTTTGATGGCATAGATTTGCCCCTCATACCACAGCCGTTTAATCAAAGAGATTCTATAAGATGTATTTATTAAAAGAAAAAATATTCAACTATTAAAGAACCTCTTTAGACAGTTGAAACACTGGCTCTTTGACCACATTACCATTGATATAAAGAGTTTAGTATATTATACTTATTTACATTTCTATTTATCTTGTCACTGGCTACAGAAAAATGGTCATACTTGTTCTTTATTCCCTTCCATCAAATGTTGCACAAGGATTTGTGTGTAGTCAAAATATTAAAGCAGAAAAACACAAGAAAACTACTAGCAGAACATGCATAGAAGAATTCAGTCCAAACCAATGTATATTTTGGTTGCAGACTGACATCGATTATTATTCTACTCTGTGACATCCTATGGGTGAAGATCTTTGTAATAGTGTTTCCAAAAAGGTTGAGTTTTCGTGGACTCCAAATCTGCAAGT

Fln Alignment:

sp_v1.1_unigene5957___MAQANGDNKPGSQHTEEQVVLDEEIGHVRVVTLNSPRKLNIITSKVVSRLAELYEKWENENGAELIIIKGTGRAFSAGGDLRMFYEGRADESWIEVVYRMYWLQYHIHTYKKTQVSIVHGIAIGGGASLAVPATFSVVTEKTVFASPEAGFGFHTDCSFSYIHSHLPGNLGEYLALTGARLDGAEMIAIGLATHYVPSEKLPELEKRLTSLNSGDKDVVKATIEEFSIQVQPGEKSILHNRSLIEKCFSKDTVEAVIEFLVNESNREGNEWVKETIKSLKRSSPTGLKMTFQSIRQGCNQTLSECLKKEFRLTINTLRGVISNDMYEGIRAIMIEKDNSPKWNPPLDEVTNEKLNLVFKPFNDEFELQLPAENKISRWEGKYESSGY
A9NVZ0______________MASPMADSKPGSQPS--QVVLDEEKGRVRVVTLNNPRKLNIISREVVIRLTEIYEKWEKENDAEMIIIKGAGRAFSAGGDLRVFYYGKADKHVIEAVYKMYWLQYHIHTYKKTLVAIVNGLAIGGGASITVASTFKVVTEKTVLSAPEAGFGFHTDASLSYILSHLPGHLGEYLALTGARLDGAEMIATGLGTHYIPSEKLEDLEKRLVDLNSGDRNIVRAAMEEFSLQVQPGEKSILYNRSLIAKCFSKDTVEEIIETLIAENNMEGNEWVKDTIQNLKRSSPTGLKMTLRSVRQARKQTLSECLKKEFRLTINTLRGVISNDIYEGMRALVIDKDNSPKWNPPLSEVTEEKLDLVFSSFEEEFELQLPQEEKISRWEGKFECSGF

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
210	87		12		0.992554
225		12		87	0.992554
373			16	83	0.994512
374			33	16	1.0
477	85		14		0.993533
489		85		14	0.993533
659		10		90	0.90298
674	10		90		0.90298
748	81		18		0.999994
976			14	85	0.993533
1151	12		87		0.992554
1587	80		20		0.995493
1588	80		20		0.995493
1819	75			25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
335	346	TCA TCA TCA TCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain