SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5944

Length: 2478 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene5944
ATGGGGAATGGGTCTCACGGAATTCCACCCTAAAATCTAGTTCCCTCCGTTCCCAAAATTTTGGAGAAAGCACTGAGTCAGATTTTTATAGATTATTCTTGCATCGGCTTTTTATAGATCAATCTCGCTCATTTCATTTTACACCTTAAAGTCACAGACACAAATAAAAGATCTCCTATGAAATTAGACACAATAATATGTATGGTATGAGCGTGTGAAAATTTTAAACTCGGATTGTTGCCGACTGGCGATATACAATTCCTATCCTGAGCCTAACGCGGAAAGCTCTATTACACTTAGAGGTTCAAGTGGGCTTATCAGAAGAGGCGTGGATGGCCACGATCACGATCACTTCCTGCGAGATGAACTACCTGGTTTTTCGTTACCTCCATGAATCAGGGTTTATCCATGCTGCATTTACATTAGGGTATGAAGCTGGCATCCATAAAAATCCCATAGATGGTAATCTAGTACCTCCTGGTGCGCTTGTGTCTTTTGTTCAGAAAGGATTACAATATTTGGAATTGGAGGCAAACCTGACCAATAATGGTACAGACGTGGATGGTGATTTTTCTCTTTTGCAACCATTGGATCTGATCACAAAAGATGTTTATGAGCTAAGGCAAATGATAAAAGAGAAAAGGGAAAAGCTTGAGAAAGAGAAAGAGAAAGAGAGAGAGAAGGAAAAAGAACGTGAACGAGAAAATGAACGTGAACGTGAACGCGAAAGAGAGAGGGAAAAGGAGAGGGAAAAGGAGAGAGAAAGACAGGAAAGGGAGAAAGAAAGAGATCGAGAAAGGGAACGACTAGAAAAGGAGAGGGACAGAGAGCGAGAAAAAGAGAAGGAAAAGGAGAAGGAACACGAGGAATATGTTGAGAAGGAGAAAGATAGAGATCGAGAAGAGAAAGTCAAGGTTAAAGTTGAGGAGACTAGAGTGCCTGCAGGCCCAGAACCCATGGAGATTACAACGGGACCACATCTGTCATCTACATTTAGTGAGATTCCAAGTTCAGATGTCACTATCTTGGAAGGACACACTTCTGAGGTTTTTATTTGTGCATGGAGTCCAACAGGTTCACTGCTTGCTTCTGGATCTGGAGACTCAACAGCTCGAATTTGGACAATTCCAGAAGGCCCATGTGGATCTACAATCCAGAATGGGACACCAAAAGCTCTTGTTTTGAAACATTTCAAGGGTAGAACAAATGAAAAAAGCAAGGATGTGACAACCCTTGATTGGAATGGAGAAGGGACACTACTCGCAACTGGTTCTTATGATGGACAAGCAAGGATTTGGAGTAAGGATGGAGAATTGAGGAACACATTAAACAAACATAAAGGACCCATTTTCTCTCTTAAATGGAACAAGAAAGGAGACTGCCTTCTTAGTGGAAGTGTGGATAAAACTGCGATTATATGGGATGCCAAGACGGGCGAATCAAAACAACAATTTGAGTTTCATTCAGCACCCACTCTTGATGTTGATTGGCGGAATAATGTCTCTTTTGCCACGTGCTCCACAGACAAGATGATATATGTTTGTAAATTTGGGGAAAATCGCCCTATCAAAACCTTTTCTGGGCATCAGGATGAAGTCAATGCTATTAAATGGGACCCGACTGGGACACTTCTTGCTTCTTGCTCTGATGACTTCACAGCAAAGATATGGAGTATGAAGCAGGATAGATGTCTACATGATCTCAAGGAACACACTAAGGAAATTTATACAATCAAGTGGAGTCCCACTGGTTCGGGTACAAACAATCCTAATCAGCAATTAGTCTTAGCCAGTGCATCATTTGATTCAACAATCAAACTATGGGATGTTGATCAAGGAAGCCAATTGTTCAGCTTGACTAGTCATAGTGAACCTGTATATTCAGTTGCTTTCAGTCCAAATGGAGAGTACCTGGCCAGTGGATCATTTGACAGGTGTTTGCATATCTGGTCTGTGAAGGATGGAAGCCTTGTCAAGACATATAGAGGAAGTGGTGGAATTTTTGAAGTTTGCTGGAATAGAGAAGGCGATAAAGTTGCAGCTTGTTTTTCAAACAACACAGTCTGTGTATTGGATTTTAGAATGTAACTTCAGGAAATAGCAATGATTCTTCCCCGGAAGGATGTTTCCTGCTGGGTTATAAAATAGATTCATTTGGTTCATTCTACATTATTTTGTCTGATCGTTAAAATTTCTCAGTTATATTTGCATATGGCTTCCTGTTGATCTTGGTGCTGTTTGAATTATTCCAACTAACTAATAATTTACAAGTTGAGATCCCATATTATTTATATATTGTGCAAGGTTCACTGTTTGTAAACCGTATAAGCAGTAAACCATATGTATATCATATCAGGCTAACATAATGAAAGTAGTAAATTGTGATACCGGGGGCATTAGAAGTAATTTTGTTTTTATTAGTTGTTAGGTGTAAACTGGTTAATGACTTCACTTCCATTTTTGTTGGTTTGGAATCTGC

Ace file of the UniGene sp_v1.1_unigene5944

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MIP-T3 multi-domain protein	-	-	8.0e-16	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Blast2go	protein	-	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	85%
Blast2go	histone deacetylation	GO:0016575	Biological Process	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: your sequence is longer than subject: 585 - 314

Fln protein: MATITITSCEMNYLVFRYLHESGFIHAAFTLGYEAGIHKNPIDGNLVPPGALVSFVQKGLQYLELEANLTNNGTDVDGDFSLLQPLDLITKDVYELRQMIKEKREKLEKEKEKEREKEKERERENEREREREREREKEREKERERQEREKERDRERERLEKERDREREKEKEKEKEHEEYVEKEKDRDREEKVKVKVEETRVPAGPEPMEITTGPHLSSTFSEIPSSDVTILEGHTSEVFICAWSPTGSLLASGSGDSTARIWTIPEGPCGSTIQNGTPKALVLKHFKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSKDGELRNTLNKHKGPIFSLKWNKKGDCLLSGSVDKTAIIWDAKTGESKQQFEFHSAPTLDVDWRNNVSFATCSTDKMIYVCKFGENRPIKTFSGHQDEVNAIKWDPTGTLLASCSDDFTAKIWSMKQDRCLHDLKEHTKEIYTIKWSPTGSGTNNPNQQLVLASASFDSTIKLWDVDQGSQLFSLTSHSEPVYSVAFSPNGEYLASGSFDRCLHIWSVKDGSLVKTYRGSGGIFEVCWNREGDKVAACFSNNTVCVLDFRM*

Protein Length: 586

Fln nts: ATGGGGAATGGGTCTCACGGAATTCCACCCTAAAATCTAGTTCCCTCCGTTCCCAAAATTTTGGAGAAAGCACTGAGTCAGATTTTTATAGATTATTCTTGCATCGGCTTTTTATAGATCAATCTCGCTCATTTCATTTTACACCTTAAAGTCACAGACACAAATAAAAGATCTCCTATGAAATTAGACACAATAATATGTATGGTATGAGCGTGTGAAAATTTTAAACTCGGATTGTTGCCGACTGGCGATATACAATTCCTATCCTGAGCCTAACGCGGAAAGCTCTATTACACTTAGAGGTTCAAGTGGGCTTATCAGAAGAGGCGTGG_-_ATGGCCACGATCACGATCACTTCCTGCGAGATGAACTACCTGGTTTTTCGTTACCTCCATGAATCAGGGTTTATCCATGCTGCATTTACATTAGGGTATGAAGCTGGCATCCATAAAAATCCCATAGATGGTAATCTAGTACCTCCTGGTGCGCTTGTGTCTTTTGTTCAGAAAGGATTACAATATTTGGAATTGGAGGCAAACCTGACCAATAATGGTACAGACGTGGATGGTGATTTTTCTCTTTTGCAACCATTGGATCTGATCACAAAAGATGTTTATGAGCTAAGGCAAATGATAAAAGAGAAAAGGGAAAAGCTTGAGAAAGAGAAAGAGAAAGAGAGAGAGAAGGAAAAAGAACGTGAACGAGAAAATGAACGTGAACGTGAACGCGAAAGAGAGAGGGAAAAGGAGAGGGAAAAGGAGAGAGAAAGACAGGAAAGGGAGAAAGAAAGAGATCGAGAAAGGGAACGACTAGAAAAGGAGAGGGACAGAGAGCGAGAAAAAGAGAAGGAAAAGGAGAAGGAACACGAGGAATATGTTGAGAAGGAGAAAGATAGAGATCGAGAAGAGAAAGTCAAGGTTAAAGTTGAGGAGACTAGAGTGCCTGCAGGCCCAGAACCCATGGAGATTACAACGGGACCACATCTGTCATCTACATTTAGTGAGATTCCAAGTTCAGATGTCACTATCTTGGAAGGACACACTTCTGAGGTTTTTATTTGTGCATGGAGTCCAACAGGTTCACTGCTTGCTTCTGGATCTGGAGACTCAACAGCTCGAATTTGGACAATTCCAGAAGGCCCATGTGGATCTACAATCCAGAATGGGACACCAAAAGCTCTTGTTTTGAAACATTTCAAGGGTAGAACAAATGAAAAAAGCAAGGATGTGACAACCCTTGATTGGAATGGAGAAGGGACACTACTCGCAACTGGTTCTTATGATGGACAAGCAAGGATTTGGAGTAAGGATGGAGAATTGAGGAACACATTAAACAAACATAAAGGACCCATTTTCTCTCTTAAATGGAACAAGAAAGGAGACTGCCTTCTTAGTGGAAGTGTGGATAAAACTGCGATTATATGGGATGCCAAGACGGGCGAATCAAAACAACAATTTGAGTTTCATTCAGCACCCACTCTTGATGTTGATTGGCGGAATAATGTCTCTTTTGCCACGTGCTCCACAGACAAGATGATATATGTTTGTAAATTTGGGGAAAATCGCCCTATCAAAACCTTTTCTGGGCATCAGGATGAAGTCAATGCTATTAAATGGGACCCGACTGGGACACTTCTTGCTTCTTGCTCTGATGACTTCACAGCAAAGATATGGAGTATGAAGCAGGATAGATGTCTACATGATCTCAAGGAACACACTAAGGAAATTTATACAATCAAGTGGAGTCCCACTGGTTCGGGTACAAACAATCCTAATCAGCAATTAGTCTTAGCCAGTGCATCATTTGATTCAACAATCAAACTATGGGATGTTGATCAAGGAAGCCAATTGTTCAGCTTGACTAGTCATAGTGAACCTGTATATTCAGTTGCTTTCAGTCCAAATGGAGAGTACCTGGCCAGTGGATCATTTGACAGGTGTTTGCATATCTGGTCTGTGAAGGATGGAAGCCTTGTCAAGACATATAGAGGAAGTGGTGGAATTTTTGAAGTTTGCTGGAATAGAGAAGGCGATAAAGTTGCAGCTTGTTTTTCAAACAACACAGTCTGTGTATTGGATTTTAGAATGTAA___CTTCAGGAAATAGCAATGATTCTTCCCCGGAAGGATGTTTCCTGCTGGGTTATAAAATAGATTCATTTGGTTCATTCTACATTATTTTGTCTGATCGTTAAAATTTCTCAGTTATATTTGCATATGGCTTCCTGTTGATCTTGGTGCTGTTTGAATTATTCCAACTAACTAATAATTTACAAGTTGAGATCCCATATTATTTATATATTGTGCAAGGTTCACTGTTTGTAAACCGTATAAGCAGTAAACCATATGTATATCATATCAGGCTAACATAATGAAAGTAGTAAATTGTGATACCGGGGGCATTAGAAGTAATTTTGTTTTTATTAGTTGTTAGGTGTAAACTGGTTAATGACTTCACTTCCATTTTTGTTGGTTTGGAATCTGC

Fln Alignment:

sp_v1.1_unigene5944___VTILEGHTSEVFICAWSPTGSLLASGSGDSTARIWTIPEGPCGSTIQNGTPKALVLKHFKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW-SKDGE-LRNTLNKHKGPIFSLKWNKKGDCLLSGSVDKTAIIWDAKTGESKQQFEFH------SAPTLDVDWRNNVSFATCSTDKMIYVCKFGENRPIKTFSGHQDEVNAIKWDPTGTLLAS--CSDDFTAKIW
A9NPC1______________IKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTGKCLKVLP-----------------AHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSV--TNGKYIVSGSEDNCVYLWDLQARNIVQKLEGHTDTVISVSCHPTENKIASGALENDKTLRIW

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
280	25		75		0.996473
281		75		25	0.996473
284	75		25		0.996473
285	75		25		0.996473
487		26	73		1.0
559		66		33	1.0
571			10	90	0.991528
1517	22		77		0.999999
1770		90	10		0.90298
1774	90		10		0.90298
1778		10	90		0.90298
1779		90		10	0.90298
1780	90	10			0.90298
2291		14		85	0.993533
2340		62	37		1.0
2355		12		87	0.992554
2356		85		14	0.993533
2387	83		16		0.994512
2388		16		83	0.994512
2392	25		75		0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
654	675	GAGAAA GAGAAA GAGAAA GAGA	22
707	724	TGAACG TGAACG TGAACG	18

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain